PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678440443

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

TCP

Protein Properties

Length: 240aa MW: 25641.6 Da PI: 9.8089

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678440443	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123.7	2e-38	21	128	2	109
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg..........k 89 a kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++a+++ +++s s +++ + + 678440443 21 ANKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPATFStvSPSSTSDNNKPL--ShspapfllgkR 118 679******************************************************************77744333333333322..122344444431 PP TCP 90 aaksaakskksqksaasaln 109 + ++++ ++ 678440443 119 ----------LRPEDHEDQE 128 ..........2222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.1E-33	27	122	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.892	27	81	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MSTSPSDGPH GGAGPTIPST ANKKPPAKDR HSKVDGRGRR IRMPIICAAR VFQLTRELGH 60 KSDGQTIEWL LRQAEPSIIA ATGTGTTPAT FSTVSPSSTS DNNKPLSHSP APFLLGKRLR 120 PEDHEDQELS KDDVNAPPSS SPALGPAAGF WALPARPDFG QVWSFAPHPE MVVNNASHLT 180 HPSSLRFLQQ QQQPLTLNEA SAARVGNYLP IAQVQGHHLN LLASLSGGTP QSSEQRRGTD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678440443

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022868503.1	1e-102	transcription factor TCP7-like
Refseq	XP_022868504.1	1e-102	transcription factor TCP7-like
Swissprot	Q9FMX2	2e-77	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A4D8XZT1	1e-100	A0A4D8XZT1_SALSN; Transcription factor TCP21 (Protein CCA1 HIKING EXPEDITION)
TrEMBL	A0A4D8YY13	1e-100	A0A4D8YY13_SALSN; Transcription factor TCP21 (Protein CCA1 HIKING EXPEDITION)
STRING	Solyc01g008230.2.1	9e-83	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3951	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	3e-63	TCP family protein