PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678440508
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family SRS
Protein Properties Length: 220aa    MW: 24390.9 Da    PI: 8.9932
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678440508genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702117.61.7e-36111198380
     DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..........aeaaskrkrelks 80 
                 g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaa rrerqq+ a+++++++++            +++ kr+r++++
  678440508 111 GGGISCQDCGNQAKKDCTHMRCRTCCKSRGFQCSTHVKSTWVPAAVRRERQQRIATLQQQNQSQDqrrdreippgVKENGKRHRSENT 198
                5789**************************************************9998887776645544444443333333333321 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.2E-34113200IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.4E-27115157IPR006510Zinc finger, lateral root primordium type 1
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MAGFFSLGTG GGRAATADQE PSGHNNNTEM NPESWFLFRN EENPYKSFEL WHPQPHPQQH  60
QAENFLQRGT TLQDLYASAG GLAVGPGRGG FSMSGDHSPR SGFLMMRSSG GGGISCQDCG  120
NQAKKDCTHM RCRTCCKSRG FQCSTHVKST WVPAAVRRER QQRIATLQQQ NQSQDQRRDR  180
EIPPGVKENG KRHRSENTSP DNNNNNNSLF CTRIVTSMTG
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269|PubMed:24142382, ECO:0000269|PubMed:24884371}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678440508
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM9801782e-37KM980178.1 Scutellaria baicalensis SSR maker SSR9 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100954.11e-77protein SHORT INTERNODES
SwissprotK4B6C92e-50EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBLS8C9907e-84S8C990_9LAMI; Uncharacterized protein
STRINGMigut.L00031.1.p5e-62(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67824110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.14e-33Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]