PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678440513

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

SRS

Protein Properties

Length: 203aa MW: 21205.9 Da PI: 5.0839

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678440513	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	83.9	3.9e-26	73	127	100	154
DUF702 100 letsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 le s+P+evsseavfrcvrv++ ddge++laYqtav+i GhvfkGiLydqG+++ 678440513 73 LELGSFPSEVSSEAVFRCVRVTANDDGEDKLAYQTAVKICGHVFKGILYDQGVDS 127 45566************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.9E-23	68	126	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	1.4E-26	78	125	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MLSASPDKAF VKDHLLFPSL VTSLLLLLLP FLLLSLHFKL SQPSFNSNSI AESISGSLAS 60 RDHSLVFSLF VGLELGSFPS EVSSEAVFRC VRVTANDDGE DKLAYQTAVK ICGHVFKGIL 120 YDQGVDSQQY LAGETSSGGG GSVSAGGAQQ LNLIPGTTSA TATSAPPNTS AAPGTSPFLD 180 PSLYPTPINS FIAGNQFFPS SRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678440513

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090405.1	2e-45	protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9SD40	3e-33	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	S8DYK7	7e-47	S8DYK7_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_010033452.1	1e-36	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA18294	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	4e-31	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]