PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678440829
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family WOX
Protein Properties Length: 336aa    MW: 37445.4 Da    PI: 8.0146
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678440829genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.87.8e-1844104257
                T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                ++R+++++eq+++Le  F++ + +p+++e++++  +l    ++ +++V++WFqNr+ + k+
  678440829  44 KPRWNPKPEQVRILEGIFNSgTVNPTRDEIRKIRIQLqeygQVGDANVFYWFQNRKSRSKH 104
                89*****************99*************************************995 PP
2Wus_type_Homeobox108.34.5e-3543106265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +++RW+P+peQ++iLe +++sG+++P+++ei++i+ +L+eyG+++d+NVfyWFQNrk+R+++kq
          678440829  43 PKPRWNPKPEQVRILEGIFNSGTVNPTRDEIRKIRIQLQEYGQVGDANVFYWFQNRKSRSKHKQ 106
                        689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.27E-1340110IPR009057Homeodomain-like
PROSITE profilePS5007110.67340105IPR001356Homeobox domain
SMARTSM003891.4E-842109IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-843112IPR009057Homeodomain-like
CDDcd000864.80E-843106No hitNo description
PfamPF000462.9E-1544104IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0030010Biological Processestablishment of cell polarity
GO:0048825Biological Processcotyledon development
GO:0090451Biological Processcotyledon boundary formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MASSKRHWPS MFKSKPHAQW SHEINNSSNC HGAQCSPERT PEPKPRWNPK PEQVRILEGI  60
FNSGTVNPTR DEIRKIRIQL QEYGQVGDAN VFYWFQNRKS RSKHKQRQQQ QNGAALKSPS  120
PALQTITSPP PTIPHCDQPS SNLQAKSQDP QSAPPPAKPP VSSELLYEPT FLFESLSTSA  180
NGFCSSDRNC PGLLLNEVMV MSQCQCHSSP QTPILPPPIN QNLLVPGAEV GPTRSTVFIN  240
DVWFEIGSGP FNVREAFGDD ALLIQSTGQP VLTDEWGVTL QPLQNGGFYY LLRPFATQSP  300
AHRTFELVLL ILSPALLGIR ESFLPSFDRL KCLEQV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor, which may be involved in embryonic patterning (PubMed:14711878). May be required for basal embryo development after fertilization (PubMed:14711878). Acts partially redundantly with STIP in promoting embryonic cell division and proliferation (PubMed:17706632). Promotes cotyledon boundary formation by maintaining the symmetry in CUC genes expression domains (PubMed:22827849). {ECO:0000269|PubMed:17706632, ECO:0000269|PubMed:22827849, ECO:0000303|PubMed:14711878}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678440829
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in the zygote after fertilization by the transcription factor WRKY2 (PubMed:21316593). Up-regulated by CLE8 (PubMed:22427333). {ECO:0000269|PubMed:21316593, ECO:0000269|PubMed:22427333}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086022.15e-93WUSCHEL-related homeobox 8-like isoform X1
SwissprotQ6X7J51e-70WOX8_ARATH; WUSCHEL-related homeobox 8
TrEMBLA0A4D9AMH22e-89A0A4D9AMH2_SALSN; Uncharacterized protein
STRINGGorai.011G031300.13e-85(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59422335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.12e-44homeobox-3
Publications ? help Back to Top
  1. Xiao W, et al.
    DNA methylation is critical for Arabidopsis embryogenesis and seed viability.
    Plant Cell, 2006. 18(4): p. 805-14
    [PMID:16531498]
  2. Wang W, et al.
    Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice.
    PLoS Genet., 2014. 10(3): p. e1004154
    [PMID:24625559]
  3. Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S
    Wuschel-related homeobox 8/9 is important for proper embryo patterning in the gymnosperm Norway spruce.
    J. Exp. Bot., 2014. 65(22): p. 6543-52
    [PMID:25205582]
  4. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]