PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678441906
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MIKC_MADS
Protein Properties Length: 257aa    MW: 29253.4 Da    PI: 9.2921
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678441906genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.21.6e-26959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krie+++ rqvtfskRr+g++KK +ELS+LCda++ +i+fss+gkl ey +
  678441906  9 KRIESTTSRQVTFSKRRAGLMKKTHELSILCDAQIGLIVFSSKGKLTEYTT 59
               79***********************************************75 PP
2K-box54.26.1e-19941721492
      K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                +e+++qela++kke+ nL+ ++ +++G+dL s ++ eL+++eqqLe+s+ k+Rs+K +ll+eq+++l++   ++q +++
  678441906  94 NEQMYQELARMKKETLNLELSLQRYKGDDLCSVQFDELNRIEQQLEHSVLKVRSRKFQLLHEQLDNLKRTLMSNQLQKQ 172
                689*****************************************************************99888877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.515161IPR002100Transcription factor, MADS-box
CDDcd002651.15E-40276No hitNo description
SuperFamilySSF554551.7E-30282IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.5E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.33494181IPR002487Transcription factor, K-box
PfamPF014861.1E-1594172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGRGKIQVKR IESTTSRQVT FSKRRAGLMK KTHELSILCD AQIGLIVFSS KGKLTEYTTP  60
PLSMKEIIDR YSKMQGIHIP DNNAAAGSSM GLYNEQMYQE LARMKKETLN LELSLQRYKG  120
DDLCSVQFDE LNRIEQQLEH SVLKVRSRKF QLLHEQLDNL KRTLMSNQLQ KQAEVESQQQ  180
GIADLKLVDQ QQPLLNQFLF SREDLQLGTL PLHPHAYRLQ PAHPNLQDFG LGIPYFTSSS  240
DCNIGAGSSH VYSRFAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-18184182MEF2C
5f28_B9e-18184182MEF2C
5f28_C9e-18184182MEF2C
5f28_D9e-18184182MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678441906
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012843283.11e-107PREDICTED: MADS-box protein defh21
SwissprotQ8RVL42e-97DEF21_ANTMA; MADS-box protein defh21
TrEMBLS8CL111e-108S8CL11_9LAMI; Uncharacterized protein
STRINGMigut.C01064.1.p1e-107(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.31e-55MIKC_MADS family protein