PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678442105

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

Trihelix

Protein Properties

Length: 431aa MW: 48056.5 Da PI: 5.6456

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678442105	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	78.5	9.8e-25	112	196	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e+++Li +r+e++ ++++k++k+lWe +s km+e+gf rsp++C++kw+nl k+ykk k+++ +++ + s + ++++e 678442105 112 WVQEETRVLISLRKEIDLLFNTSKSNKHLWETISMKMKEKGFDRSPTMCTDKWRNLLKEYKKAKQNSPDGNGNGSAKLNCYKDIE 196 **********************************************************************999999999999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	8.722	104	168	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	7.9E-5	105	170	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-4	108	170	IPR001005	SANT/Myb domain
CDD	cd12203	3.08E-28	110	175	No hit	No description
Pfam	PF13837	1.2E-19	111	197	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MLSLRQPKKR RSPTSVEIPN SCKEEEVCAE EAMFMPDKSS AEEELALDFY NGKQESPHQN 60 NMIIPVASQS NLQLTDVVVP DSSGGDDHSN TLNHNHSNPG FSSGPKKRAE TWVQEETRVL 120 ISLRKEIDLL FNTSKSNKHL WETISMKMKE KGFDRSPTMC TDKWRNLLKE YKKAKQNSPD 180 GNGNGSAKLN CYKDIEEILN ERNKSGPSWK NPSVSNNAGA SKVDSFMNFA DKAIDETSLT 240 FGPVEANGRS TLNLERGLDH EGHPLAIATA DTVGADGVSP WNWRGTPGSG EDSSTYEGRV 300 IIVKCDAYTK RVGIDASSDA IKETIKSAFG LRTKQAFWLE DEDNVIRAID RNMPLGNYTL 360 HVDEGLTVKI CYCEESSHLQ VHTENKTFYT DDDFHGFLTR RGWTCLRECN GYCNIDSIGE 420 LCPGAAYRGV H

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MLSLRQPKKR RSPTSVEIPN SCKEEEVCAE EAMFMPDKSS AEEELALDFY NGKQESPHQN  60
NMIIPVASQS NLQLTDVVVP DSSGGDDHSN TLNHNHSNPG FSSGPKKRAE TWVQEETRVL  120
ISLRKEIDLL FNTSKSNKHL WETISMKMKE KGFDRSPTMC TDKWRNLLKE YKKAKQNSPD  180
GNGNGSAKLN CYKDIEEILN ERNKSGPSWK NPSVSNNAGA SKVDSFMNFA DKAIDETSLT  240
FGPVEANGRS TLNLERGLDH EGHPLAIATA DTVGADGVSP WNWRGTPGSG EDSSTYEGRV  300
IIVKCDAYTK RVGIDASSDA IKETIKSAFG LRTKQAFWLE DEDNVIRAID RNMPLGNYTL  360
HVDEGLTVKI CYCEESSHLQ VHTENKTFYT DDDFHGFLTR RGWTCLRECN GYCNIDSIGE  420
LCPGAAYRGV H

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	1e-37	106	194	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678442105

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071308.1	0.0	trihelix transcription factor GT-4-like
Swissprot	Q9LU92	1e-150	TGT4_ARATH; Trihelix transcription factor GT-4
TrEMBL	S8CPS6	0.0	S8CPS6_9LAMI; Uncharacterized protein
STRING	Migut.E00236.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5113	21	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-149	Trihelix family protein