PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678442361
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family DBB
Protein Properties Length: 251aa    MW: 28070.7 Da    PI: 4.3841
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678442361genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box217.1e-071547436
   zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
               r C+++++ ++ l+C+ ++  lC  C  e H+ 
  678442361 15 RLCDLCNSSKALLYCRADSAKLCFHCDREAHST 47
               78******99*********************65 PP
2zf-B_box34.34.8e-1159100542
   zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg....Htvvpl 42 
                 C+ +++ + ++fC+++++ lC++C  e+H++    H+++p+
  678442361  59 LCDACNSAPSSIFCFTDNVVLCQNCDWEIHSNlrgvHDRRPI 100
                7*****************************88999**99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.3E-101259IPR000315B-box-type zinc finger
PROSITE profilePS501199.8551259IPR000315B-box-type zinc finger
CDDcd000216.30E-51546No hitNo description
PfamPF006432.2E-51554IPR000315B-box-type zinc finger
SuperFamilySSF578459.84E-553101No hitNo description
PROSITE profilePS5011910.11155100IPR000315B-box-type zinc finger
PfamPF006434.5E-858100IPR000315B-box-type zinc finger
CDDcd000212.27E-759100No hitNo description
SMARTSM003360.1260100IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MSLLVKETNP CFGDRLCDLC NSSKALLYCR ADSAKLCFHC DREAHSTNQL FRKHLRSLLC  60
DACNSAPSSI FCFTDNVVLC QNCDWEIHSN LRGVHDRRPI EGFSGCPSVS DLLCFVGLED  120
LGKKSPVSED VDNLDLEWMD LLGWETPSVL CLEDLIVIND DFPIPEHSIQ SMTLPPLPKN  180
RNASCGKYKE EILTQLRQMA RTDPEFDGCL QDLEPTSEPP QADNSSDQQQ STISIPVTQG  240
ILSSFLAERV Q
Cis-element ? help Back to Top
SourceLink
PlantRegMap678442361
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079734.18e-92zinc finger protein CONSTANS-LIKE 13
SwissprotO822562e-66COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A022S3846e-87A0A022S384_ERYGU; Uncharacterized protein
TrEMBLS8DS634e-87S8DS63_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.D00173.1.p9e-88(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73622228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.23e-69B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]