PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678442449
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family S1Fa-like
Protein Properties Length: 84aa    MW: 9279.93 Da    PI: 10.1322
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678442449genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA122.81.2e-382084670
       S1FA  6 veakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
               v+akG nPGlivll+vggl+++flvgny++y+yaqk+lP +kkkPvskkk+kre+lkqGv++PGe
  678442449 20 VDAKGSNPGLIVLLLVGGLVVLFLVGNYVMYMYAQKTLPHKKKKPVSKKKMKRERLKQGVSAPGE 84
               789*************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190130.0062084No hitNo description
PfamPF046896.4E-382184IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MDNGEDFEYQ TPPSFDPVGV DAKGSNPGLI VLLLVGGLVV LFLVGNYVMY MYAQKTLPHK  60
KKKPVSKKKM KRERLKQGVS APGE
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678442449
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104121.23e-27DNA-binding protein S1FA
RefseqXP_024026346.13e-27DNA-binding protein S1FA
SwissprotQ423371e-15S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBLB9SGP86e-21B9SGP8_RICCO; DNA-binding protein S1FA, putative
STRINGLus100150734e-25(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31742249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37120.14e-06S1FA-like DNA-binding protein