PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678442531

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

NAC

Protein Properties

Length: 184aa MW: 20893.6 Da PI: 6.5059

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678442531	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	103.5	2.7e-32	7	120	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lppGfrF Ptdeelvv++L ++++ +++ + i+++ + ++PwdL+ k+ e ++wyf+s+r ++r+t+sg W a g d++++s +g+++ 678442531 7 LPPGFRFYPTDEELVVHFLYRRAALLPCHP-DLIPDLALRPCDPWDLHGKAMREGDKWYFYSRRT--------QRRVTASGQWLADGADEAIHS-NGQKI 96 79***********************999.89**********9666677889*985........479**************.999 PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 glkk L+fy g+kt+W+mhe++l 678442531 97 GLKKFLAFY----VGGVKTNWIMHEFAL 120 *******....7899*******86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.23E-45	4	141	IPR003441	NAC domain
PROSITE profile	PS51005	38.627	7	143	IPR003441	NAC domain
Pfam	PF02365	2.0E-21	8	120	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0043067	Biological Process	regulation of programmed cell death
GO:0048367	Biological Process	shoot system development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MGGHFNLPPG FRFYPTDEEL VVHFLYRRAA LLPCHPDLIP DLALRPCDPW DLHGKAMREG 60 DKWYFYSRRT QRRVTASGQW LADGADEAIH SNGQKIGLKK FLAFYVGGVK TNWIMHEFAL 120 LQPGSRNAKP DCSKWVICRV YEDGGGSDRD GGPELSCLDE VFLSIDDDDD LGEISSQAYK 180 RRTK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-41	4	149	17	174	NAC domain-containing protein 19
3swm_B	1e-41	4	149	17	174	NAC domain-containing protein 19
3swm_C	1e-41	4	149	17	174	NAC domain-containing protein 19
3swm_D	1e-41	4	149	17	174	NAC domain-containing protein 19
3swp_A	1e-41	4	149	17	174	NAC domain-containing protein 19
3swp_B	1e-41	4	149	17	174	NAC domain-containing protein 19
3swp_C	1e-41	4	149	17	174	NAC domain-containing protein 19
3swp_D	1e-41	4	149	17	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678442531

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022898087.1	2e-73	NAC domain-containing protein 104
Refseq	XP_022898088.1	2e-73	NAC domain-containing protein 104
Swissprot	Q8GWK6	2e-67	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A2G9FYG1	3e-70	A0A2G9FYG1_9LAMI; Uncharacterized protein
STRING	XP_009622295.1	6e-69	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3766	24	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	7e-70	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]