PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678443007
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 27065.3 Da    PI: 8.4804
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678443007genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.66e-27958150
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               krien++ rqvtf+kRr g+lKKA ELS+LC+ae+a+i+fs++g+ly ++
  678443007  9 KRIENNTSRQVTFCKRRSGLLKKACELSILCEAEIALIVFSNRGRLYQFP 58
               79***********************************************8 PP
2K-box74.72.6e-2583167892
      K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                 lee+k e++qqe+++L+++i++Lq ++R+llGe+LesL+ ++++qLe++Lek+l +iR++K+e++l++ + l+k+ +e+++ ++
  678443007  83 ILEENKLEQCQQESKRLRQQIQMLQDSNRNLLGEGLESLNSRDMKQLESRLEKALARIRNRKHEMILAEADCLRKRIQENEKLQE 167
                48999*************************************************************************9998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-35160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.146161IPR002100Transcription factor, MADS-box
CDDcd002653.42E-37272No hitNo description
SuperFamilySSF554551.03E-29279IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-28323IPR002100Transcription factor, MADS-box
PfamPF003196.7E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.1E-1785164IPR002487Transcription factor, K-box
PROSITE profilePS5129713.0789183IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGRGKIEIKR IENNTSRQVT FCKRRSGLLK KACELSILCE AEIALIVFSN RGRLYQFPQD  60
SSIRETIERY KKKRAAEHAT GYILEENKLE QCQQESKRLR QQIQMLQDSN RNLLGEGLES  120
LNSRDMKQLE SRLEKALARI RNRKHEMILA EADCLRKRIQ ENEKLQELSM MPAGVELSMM  180
PAAPELNMMP AGPELNMMGT QAQDFGFEAF LERNMLQLNI MESMEATYHH LSGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-16158158Myocyte-specific enhancer factor 2B
1tqe_Q2e-16158158Myocyte-specific enhancer factor 2B
1tqe_R2e-16158158Myocyte-specific enhancer factor 2B
1tqe_S2e-16158158Myocyte-specific enhancer factor 2B
6c9l_A2e-16158158Myocyte-specific enhancer factor 2B
6c9l_B2e-16158158Myocyte-specific enhancer factor 2B
6c9l_C2e-16158158Myocyte-specific enhancer factor 2B
6c9l_D2e-16158158Myocyte-specific enhancer factor 2B
6c9l_E2e-16158158Myocyte-specific enhancer factor 2B
6c9l_F2e-16158158Myocyte-specific enhancer factor 2B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678443007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012855039.18e-81PREDICTED: agamous-like MADS-box protein AGL11 isoform X2
RefseqXP_012855042.16e-81PREDICTED: agamous-like MADS-box protein AGL11 isoform X4
TrEMBLA0A2G9H1Q53e-80A0A2G9H1Q5_9LAMI; MADS box transcription factor
STRINGMigut.C01334.1.p5e-78(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.44e-65MIKC_MADS family protein