PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678443126
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family FAR1
Protein Properties Length: 673aa    MW: 76890.4 Da    PI: 7.7767
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678443126genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.12e-2062155190
       FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                +fY+++Ak+ GFs+r+++++ +    +  t+r fvC + g++  +  +++k++r+r+++r+gC+a ++++k++     +w+vt ++++HnH+l 
  678443126  62 EFYSDFAKHSGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKALSENKSQRNRKSSRCGCQAFMRITKSTdlgIPEWRVTGFSNHHNHDLL 155
                6**************9998877356667999**************9999**********************99766679************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.0E-1762155IPR004330FAR1 DNA binding domain
PfamPF105511.0E-19278369IPR018289MULE transposase domain
PROSITE profilePS509669.409553589IPR007527Zinc finger, SWIM-type
PfamPF044345.9E-8559587IPR007527Zinc finger, SWIM-type
SMARTSM005754.1E-5564591IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MTEDNEHMIL MYQETSDQRS ISLDDASSTE DSPDGTKLSL ETVNDPIPYM GQRFATHDSA  60
YEFYSDFAKH SGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPVKALSE NKSQRNRKSS  120
RCGCQAFMRI TKSTDLGIPE WRVTGFSNHH NHDLLEPNQV RFLPAYRTIS ESDKSRILMF  180
AKTGISVQQM MRLLELEKCV EPGYLPFTEK DVRNLLQSLK KVDPEHGSID LLKMCRNIKD  240
KDPGFRFEFT LDSNGRLENI AWSYSSSVQS YDIFGDAVVF DTTHRLTAFD MPLGIWVGVN  300
NYGMPCFFGC VLLREENLRS FSWALKAFSG FMNGKAPETI LTDQSMCLKD AIAMELPTTK  360
HALCIWLIVA KFPSWFNAVL GERYNEWKTE FYRLYHLESV QDFEMGWQDM VNTFGLDTNR  420
HIAGLYAFRT LWALPYLRTH FFAGMTAPGH SKSINAFIQR FLSAQTRLAH FVEQVAVAVD  480
FKDQPGEQQT MQQNIQNISL KTGAPMESHA ASVLTPFAFS KFQEQLVMAA HYATYQTEDG  540
FVVRHHTKVE GGRKVYWSPR EGIISCSCHH FEFSGILCRH ALRVLSTGNC FQLPEQYLPM  600
RWRRVSSFPS GGNRHATGND HRERVELLQS MLSSLVAESA KSKQRMDLVI DQIAALLSQI  660
REQPLLTQTP HQP
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678443126
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087634.10.0protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A2G9GVP80.0A0A2G9GVP8_9LAMI; Uncharacterized protein
STRINGcassava4.1_002947m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA108962124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]