PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678443390

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

bZIP

Protein Properties

Length: 155aa MW: 17223.3 Da PI: 7.3646

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678443390	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	45.9	1.3e-14	1	48	10	60
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 10 kqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 + +NRe+A+rsR RK+a+++eLe+ v++L +eN++L+k+l + +++ k 678443390 1 MVSNRESAQRSRIRKQARLAELEQQVDKLRGENDSLAKQL---ADASQQFK 48 579**********************************555...55554444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57959	9.64E-10	1	45	No hit	No description
PROSITE profile	PS50217	9.76	1	57	IPR004827	Basic-leucine zipper domain
CDD	cd14702	1.32E-15	1	47	No hit	No description
Pfam	PF00170	2.5E-11	1	46	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.7E-11	3	48	No hit	No description
SMART	SM00338	7.6E-8	3	56	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MVSNRESAQR SRIRKQARLA ELEQQVDKLR GENDSLAKQL ADASQQFKDA TTNNRVLRSN 60 VEALRAKVKL AEDMVARGCL TSSMTHLLQN YLNMPEDYVN NTIINRLAPE MMAPGGAANP 120 NAVSEIARAN NGDKTERRND DGDVTGAALP DIWNW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that possesses broad binding specificity for DNA promoter elements with the core sequence 5'-ACGT-3'. May be involved in the regulation of genes expressed during seed development (PubMed:7919992). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:7919992}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678443390

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011082101.2	7e-43	basic leucine zipper 9
Swissprot	Q6ETX0	2e-35	RSBZ3_ORYSJ; bZIP transcription factor RISBZ3
TrEMBL	A0A2G9HEL5	5e-42	A0A2G9HEL5_9LAMI; Uncharacterized protein
TrEMBL	A0A4D9A2D3	4e-42	A0A4D9A2D3_SALSN; Uncharacterized protein
STRING	XP_009801058.1	9e-39	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8139	22	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24800.1	2e-37	basic leucine zipper 9

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Izawa T,Foster R,Nakajima M,Shimamoto K,Chua NH The rice bZIP transcriptional activator RITA-1 is highly expressed during seed development. Plant Cell, 1994. 6(9): p. 1277-87 [PMID:7919992]