PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678443687
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family S1Fa-like
Protein Properties Length: 84aa    MW: 9418.14 Da    PI: 10.1315
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678443687genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA132.11.5e-411984570
       S1FA  5 kveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                +ea G+nPGlivllvvggll++flvgny++y+yaqk+lPP+kkkP+skkk+kre+lkqGv++PGe
  678443687 19 GAEATGFNPGLIVLLVVGGLLVLFLVGNYVMYMYAQKTLPPKKKKPISKKKMKRERLKQGVSAPGE 84
               579**************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046891.6E-392184IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MDKEEDFEYQ SPPTFDRVGA EATGFNPGLI VLLVVGGLLV LFLVGNYVMY MYAQKTLPPK  60
KKKPISKKKM KRERLKQGVS APGE
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678443687
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104121.22e-29DNA-binding protein S1FA
RefseqXP_024026346.12e-29DNA-binding protein S1FA
SwissprotQ423374e-16S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBLW9SCA35e-25W9SCA3_9ROSA; DNA-binding protein S1FA1
STRINGLus100150735e-28(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31742249