PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678444242
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 201aa    MW: 23154.9 Da    PI: 5.2234
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678444242genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.61.2e-1952104456
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                ++++++eq++ Le+ F  ++++ +e++ +LA++lgL+ rqV vWFqNrR ++k
  678444242  52 KRKLSEEQVKMLERSFGCEHKLETERKDRLAAELGLDPRQVAVWFQNRRVRWK 104
                45899***********************************************9 PP
2HD-ZIP_I/II115.72.7e-3751142293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +kr+ls+eqvk+LE+sF  e+kLe+erK +la eLgl+prqvavWFqnrR R+k k+lE++y++Lk+++d+ + e++ Le+e  +L+e+l+e
    678444242  51 RKRKLSEEQVKMLERSFGCEHKLETERKDRLAAELGLDPRQVAVWFQNRRVRWKVKKLEEEYSKLKAEHDTAVVEKCLLETELLKLKEQLDE 142
                  8****************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.35846106IPR001356Homeobox domain
SMARTSM003896.5E-1749110IPR001356Homeobox domain
CDDcd000862.42E-1551107No hitNo description
SuperFamilySSF466892.65E-1852114IPR009057Homeodomain-like
PfamPF000465.5E-1752104IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-1953113IPR009057Homeodomain-like
PRINTSPR000311.9E-57786IPR000047Helix-turn-helix motif
PROSITE patternPS00027081104IPR017970Homeobox, conserved site
PRINTSPR000311.9E-586102IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MNQQEDLDDA MLVSEYYSDG IYLQPPQQQG ASEQLRRRRR GTKSAADGVV RKRKLSEEQV  60
KMLERSFGCE HKLETERKDR LAAELGLDPR QVAVWFQNRR VRWKVKKLEE EYSKLKAEHD  120
TAVVEKCLLE TELLKLKEQL DEATMEIQRL SEKHDAFSGN TNSPGASAFS MDDLLFTGMQ  180
DFESAYGGYT QGLAWGNSSY Y
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13753RRRGTKSAADGVVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678444242
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065260.14e-68homeobox-leucine zipper protein ATHB-40
SwissprotQ9ZU701e-54ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLA0A2G9G2619e-66A0A2G9G261_9LAMI; Transcription factor HEX
STRINGSolyc02g085630.2.11e-65(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18550.16e-46homeobox protein 21
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]