PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678444340
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family bHLH
Protein Properties Length: 264aa    MW: 29600.5 Da    PI: 8.9267
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678444340genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.41.5e-1478128154
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                +r++h ++Er+RR+++N+ ++ Lr+l+P++   +s++ + a+i+  A++++k++
  678444340  78 QRMTHIAVERNRRRQMNDYLAVLRSLMPPS---YSQRGDQASIVAGAINFVKEM 128
                79****************************...*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.32E-1276133No hitNo description
Gene3DG3DSA:4.10.280.101.9E-1376133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-1677147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.40277128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-1278128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-983134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550214.35E-7186255No hitNo description
CDDcd048730.00533192235No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MAAIYHENQS LFAGNLFDCG GGGGGIEQVG TTRNGDFKSP LFSVPSESPP GGCPPPMPNR  60
RKRRRTRTHK NKEEIENQRM THIAVERNRR RQMNDYLAVL RSLMPPSYSQ RGDQASIVAG  120
AINFVKEMEQ HVQFLEAMKL SGAARPQDLN VFSRFFTFPQ YTTSAEEGNC GDRRRSSIAD  180
IEVSMVETHA NIKVVSERRP KLLLRLATWL HSAGLSILHV NVTTVDPWVL YSFSVKVGED  240
CRFSTVNEIA TGVHDVLREE AQQP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16064RKRRR
26065RKRRRT
37889RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap678444340
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027074088.14e-87transcription factor bHLH96-like
SwissprotQ9C7T42e-65BH096_ARATH; Transcription factor bHLH96
TrEMBLS8C0242e-88S8C024_9LAMI; Uncharacterized protein (Fragment)
STRINGSolyc11g010340.1.12e-86(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19962462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-65bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]