PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678444359
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 28196.2 Da    PI: 9.7942
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678444359genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.71.8e-29959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krienk+nrqvtfskRr g+lKKA+E+SvLCda+v +i+fs++gkl+ey++
  678444359  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDADVGLIVFSTKGKLFEYAT 59
               79***********************************************86 PP
2K-box94.61.6e-31791745100
      K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                + k+le ++  s++ elakL++++  Lqr++Rh++GedL++L+++eLq+Le+qL+ slk++Rs+K++ + e+i+ lqkk k+lqe+n +L+kk++e
  678444359  79 ELKELELETPRSWRLELAKLNARMGVLQRSHRHYMGEDLDNLNMRELQSLEHQLDASLKHVRSRKDQAMNESISMLQKKAKALQEQNSMLEKKIKE 174
                55667888899**********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.127161IPR002100Transcription factor, MADS-box
CDDcd002656.48E-42276No hitNo description
SuperFamilySSF554555.1E-33291IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-31323IPR002100Transcription factor, MADS-box
PfamPF003195.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-313859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129715.77588178IPR002487Transcription factor, K-box
PfamPF014861.4E-2689172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRGKVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD ADVGLIVFST KGKLFEYATD  60
SCMERILERY ERSSRSEKEL KELELETPRS WRLELAKLNA RMGVLQRSHR HYMGEDLDNL  120
NMRELQSLEH QLDASLKHVR SRKDQAMNES ISMLQKKAKA LQEQNSMLEK KIKEREKEMA  180
QFIALEQHSH VTSFGQQLSN SLNDRNGNGE MYAVTGGSSR DMVVLVQDPG TSMIPRWMPH  240
HEDG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A1e-20187187MEF2 CHIMERA
6bz1_B1e-20187187MEF2 CHIMERA
6bz1_C1e-20187187MEF2 CHIMERA
6bz1_D1e-20187187MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678444359
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086917.11e-103truncated transcription factor CAULIFLOWER A
RefseqXP_011086918.11e-103truncated transcription factor CAULIFLOWER A
SwissprotQ424299e-97AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A2G9H5721e-104A0A2G9H572_9LAMI; MADS box transcription factor
STRINGXP_009792071.11e-101(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.18e-78AGAMOUS-like 8
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]