PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678444833
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB_related
Protein Properties Length: 235aa    MW: 25536 Da    PI: 9.2368
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678444833genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.21.6e-1269113347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE+  ++ + + lG+g+Wk I++++   R + q+ s+ qky
        678444833  69 PWSEEEHRAFLAGLATLGKGNWKGISAKFVPSRNPTQVASHAQKY 113
                      8**************************9999*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.06462118IPR017930Myb domain
SuperFamilySSF466896.06E-1563118IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-1465117IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.8E-1166116IPR009057Homeodomain-like
SMARTSM007173.9E-1066116IPR001005SANT/Myb domain
CDDcd001674.15E-1069114No hitNo description
PfamPF002497.7E-1069113IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MSSGECCAPC GGAFMLFGVC IGCGSAAIRK SKSVGDSPSR ECGADAAEYL SDRSRPPSLR  60
SKSRKKGVPW SEEEHRAFLA GLATLGKGNW KGISAKFVPS RNPTQVASHA QKYFNRKEAL  120
EKRQRRTSIF DIPLCIKDHH EHVQGSSSTS QTVSKKVSCY LSTTAGIDQT KAPSPPLLRQ  180
YPHPHPPQPG VLGCKCNESS SILSSCIHKI DDSTVQYCSL ERMFVRPHAL NSSLD
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678444833
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076440.17e-37probable transcription factor At5g61620
SwissprotQ7XC571e-28MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLA0A022PWJ42e-34A0A022PWJ4_ERYGU; Uncharacterized protein
STRINGMigut.F00531.1.p4e-35(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74541230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.16e-26MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]