PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678444896

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

bHLH

Protein Properties

Length: 89aa MW: 10179.2 Da PI: 9.6846

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678444896	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.3	4.1e-11	46	84	2	44
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiL 44 r +h+ E+rRR++iN++++ Lr l+P + ++K + a+ L 678444896 46 RSKHSVTEQRRRSKINERYQILRGLIPRS----DQKRDTASFL 84 899*************************8....5666666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.998	44	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.01E-10	44	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.0E-12	44	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.88E-6	46	84	No hit	No description
Pfam	PF00010	1.2E-8	46	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 89 aa Download sequence Send to blast
MKAGKNHLEE DEDVYEEFGA NNDASPSKNT NLSKANGRSD KANVTRSKHS VTEQRRRSKI 60 NERYQILRGL IPRSDQKRDT ASFLLEVQC

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678444896

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017220333.1	1e-32	PREDICTED: transcription factor BIM2 isoform X1
Refseq	XP_017220334.1	8e-33	PREDICTED: transcription factor BIM2 isoform X2
Swissprot	Q9CAA4	2e-23	BIM2_ARATH; Transcription factor BIM2
TrEMBL	A0A175YQI9	5e-31	A0A175YQI9_DAUCS; Uncharacterized protein
STRING	PGSC0003DMT400050572	4e-30	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4426	23	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	7e-26	BES1-interacting Myc-like protein 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]