PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678445343
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C3H
Protein Properties Length: 492aa    MW: 53686.3 Da    PI: 7.3867
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678445343genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.32.1e-12152176226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                +++ C f+++t tCk+Gd+CkF+H+
  678445343 152 GEKDCEFYMQTRTCKFGDSCKFHHP 176
                7889********************8 PP
2zf-CCCH33.76.3e-11202228127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                ++++ C++f+ t  Ck+G+rCkF+H++
  678445343 202 PGEPDCPYFLNTKRCKFGSRCKFNHPK 228
                5789*********************96 PP
3zf-CCCH23.69.3e-082562711227
                TS--TTTTT-SS-SSS CS
    zf-CCCH  12 tGtCkyGdrCkFaHgp 27 
                tG Ck+G++CkF H++
  678445343 256 TGSCKFGATCKFDHPK 271
                9*************96 PP
4zf-CCCH37.83.3e-12393417226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                ++ +C+++++tG C++G++CkF+H+
  678445343 393 GQTECDYYMKTGSCRFGGSCKFHHP 417
                6789********************8 PP
5zf-CCCH37.44.2e-12451472627
                -SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                C+f+++tGtCkyG++CkF H+p
  678445343 451 CPFYMKTGTCKYGATCKFDHPP 472
                ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.267150178IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4150177IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-6151177IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-10152176IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4156175IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.582201229IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-5201228IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-8203228IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-5206228IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-5207227IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.967234272IPR000571Zinc finger, CCCH-type
SMARTSM003565.5248271IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-5256271IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.756391419IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6391419IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-6391418IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-10393417IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4397417IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.666445473IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-5445472IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-6449472IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9451472IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-5451470IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MSNQLYGYAG GGYGGGGAGT SSLYSSRSAE NTGESSFLGI SSRYLSLDSI TPSALSSSLL  60
YVPESYSVRI PGITTSAHSY DLPEVDVGST IASIDSRYAG WKRNTSEFYE PTPLGTQMKI  120
GQTEAWYSTD LIDKRPRYES TSQLPIYPQR PGEKDCEFYM QTRTCKFGDS CKFHHPIWVP  180
EGGAPNWKEV PFAPVESLPE RPGEPDCPYF LNTKRCKFGS RCKFNHPKDL GVLQGGLEDC  240
PSSFLPERPT EPQCATGSCK FGATCKFDHP KCVQPQSDGD ESGTLGHYKV PGNTKPIDLS  300
VSPALTYNSK GFPIRLGEED CPFYLKTGSL SLFSPTINLR ASALTPGHLT SPSTNFSINV  360
PTASLLSNFD PRLTQASTKL LGLVPTIYPQ RPGQTECDYY MKTGSCRFGG SCKFHHPIDR  420
SARSVSTTAH QMENVKLTLA GLPRREDAIH CPFYMKTGTC KYGATCKFDH PPPGELVALA  480
TSKSSAREEI DG
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678445343
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022856887.10.0zinc finger CCCH domain-containing protein 37
SwissprotQ941Q31e-150C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLS8CSN40.0S8CSN4_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.M01488.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA106402125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-152floral homeotic protein (HUA1)