PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678445833

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

C2H2

Protein Properties

Length: 434aa MW: 49187.3 Da PI: 8.6531

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678445833	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	331	353	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+++F++ L H r+H 678445833 331 HVCPFCNRVFKNGQALGGHKRSH 353 79******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	2.3E-7	43	68	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.28	44	66	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.39	44	71	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.85E-5	45	66	No hit	No description
PROSITE pattern	PS00028	0	46	66	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.85E-5	266	290	No hit	No description
SMART	SM00355	270	271	291	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	3.2E-5	271	289	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.014	331	353	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	3.3E-8	331	353	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.014	331	363	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	333	353	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MKMSLFSREF DVFSDGQNGY GLRDNPKKTW RAALDSKAPL PEVRICKACG KEFKSLKALC 60 GHMACHSEKD KSVKDDSSWT SESHKIALDG FSDTDSDRLK MKNSRPFKTR KQKKFVDSSP 120 FSSVSESDEQ EQEELAICLM LLSRGHMHKG DMHSCVESSE NHSFALENKS SSNETGKLGS 180 MMEKKREIST LDAELEDSDS EYFLADSAEI ESNVKSGTHV WRKSSRRFNS DRTEFSESRK 240 DNGNYEDRFR KGKLVKTVDE QSANFSKRSK YECFNCKKIF KSYQALGGHQ PCNRTWDAAL 300 DDDHTDHNKP IQSRTKSSSQ KLANVKPTKG HVCPFCNRVF KNGQALGGHK RSHFITAHVG 360 SRKVTPTMKP ELPEILDLNL PAPEAGEHGG HGQLISRYHC ILAPEHFTYL EIHMSIPFSQ 420 VNKNQMKLQF LTIV

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MKMSLFSREF DVFSDGQNGY GLRDNPKKTW RAALDSKAPL PEVRICKACG KEFKSLKALC  60
GHMACHSEKD KSVKDDSSWT SESHKIALDG FSDTDSDRLK MKNSRPFKTR KQKKFVDSSP  120
FSSVSESDEQ EQEELAICLM LLSRGHMHKG DMHSCVESSE NHSFALENKS SSNETGKLGS  180
MMEKKREIST LDAELEDSDS EYFLADSAEI ESNVKSGTHV WRKSSRRFNS DRTEFSESRK  240
DNGNYEDRFR KGKLVKTVDE QSANFSKRSK YECFNCKKIF KSYQALGGHQ PCNRTWDAAL  300
DDDHTDHNKP IQSRTKSSSQ KLANVKPTKG HVCPFCNRVF KNGQALGGHK RSHFITAHVG  360
SRKVTPTMKP ELPEILDLNL PAPEAGEHGG HGQLISRYHC ILAPEHFTYL EIHMSIPFSQ  420
VNKNQMKLQF LTIV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678445833

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011075585.1	1e-109	uncharacterized protein LOC105160026
TrEMBL	A0A2G9HWQ1	6e-93	A0A2G9HWQ1_9LAMI; Uncharacterized protein
STRING	Migut.L01205.1.p	1e-84	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1343	22	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	1e-33	C2H2-like zinc finger protein