PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678446224
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family AP2
Protein Properties Length: 428aa    MW: 47862.4 Da    PI: 5.5324
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678446224genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.66.5e-1365121155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV++++++gr++A+++d  ++n  ++k+   g ++ +e Aa+a++ a++k++g
  678446224  65 SIYRGVTRHRWTGRYEAHLWDkSTWNEiQNKKGKQGAYDEEEAAARAYDLAALKYWG 121
                57*******************66669997755555********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-965121IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-1465130IPR016177DNA-binding domain
PROSITE profilePS5103217.51766129IPR001471AP2/ERF domain
SMARTSM003801.6E-1866135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-1166129IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MASSSEKAVR PEASGGLASS EAGASLWSDQ QLLFRGIKKA KKERGCTAKD RISRMPPCTA  60
GKRSSIYRGV TRHRWTGRYE AHLWDKSTWN EIQNKKGKQG AYDEEEAAAR AYDLAALKYW  120
GPGTHINFQV KDYARDLEEM QNVSREEYLA SLRRKSSGFS RGMSKYRTVS SRWDTPCDHT  180
QKNEAYHELY GKITFLAEFH VQFVLLSLFD ESDSIYLLDA GEGLSRVGLS SGRKIDLSNY  240
IKWWSSNRSN SSDVHSKASE KTEGCPDDIA SEVESLELLV QPTEPFQMPC LGVPLEKIKH  300
TRISAMSILM QSAAYIQLKE KVSKAKDKDD EGNEKDNQAD PELLQLSDKL CDDEMQFQSG  360
GVPLENDAYP LSSLLSAPLL THYNTIDTLA DPATWSSFIP VLPPGSSGAN EGMKNESASD  420
YTFFQPDE
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678446224
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096748.11e-148AP2-like ethylene-responsive transcription factor At2g41710 isoform X1
RefseqXP_011096749.11e-148AP2-like ethylene-responsive transcription factor At2g41710 isoform X2
SwissprotQ8GWK21e-108AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A0G2SJP01e-145A0A0G2SJP0_SALMI; AP9/EREBP Transcription Factors
STRINGMigut.M01946.1.p1e-145(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107341921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.13e-88AP2 family protein