PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678446394
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 257aa    MW: 28588.1 Da    PI: 7.7142
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678446394genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.93.1e-151763248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g+W++ Ed +lv  ++++G  +W++ ++  g+ R++k+c++rw +yl
        678446394 17 GPWSAAEDARLVAFIREHGHTNWRALPKQAGLLRCGKSCRLRWINYL 63
                     89*****************************99************97 PP
2Myb_DNA-binding54.62.5e-1769114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l
        678446394  69 RGNFTPQEEKTIIELHNSLGNK-WSKIASHLP-GRTDNEIKNVWNTHL 114
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.3411163IPR017930Myb domain
SuperFamilySSF466893.71E-2913110IPR009057Homeodomain-like
SMARTSM007171.9E-111565IPR001005SANT/Myb domain
PfamPF002491.0E-131663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-221770IPR009057Homeodomain-like
CDDcd001677.41E-91863No hitNo description
PROSITE profilePS5129425.31664118IPR017930Myb domain
SMARTSM007172.9E-1568116IPR001005SANT/Myb domain
PfamPF002492.1E-1669114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-2771117IPR009057Homeodomain-like
CDDcd001671.95E-1071114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGGGRSPCCD KTRVKTGPWS AAEDARLVAF IREHGHTNWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDVKRG NFTPQEEKTI IELHNSLGNK WSKIASHLPG RTDNEIKNVW NTHLKKKKAI  120
AFGKEHYFSS YSSSSSSSCV DVSENGGLIQ PTGERDGEKS KFMTITRAPS EEATTASCST  180
SSPSRVSVSV SVSHWPSEAK MDEDIWAVLD PMDTGSSSCK DDELKRWMAF FECELLMEGD  240
GDEWLRDSQA APLCPLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-26171178107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678446394
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022028696.16e-80transcription factor MYB58-like
TrEMBLA0A251V9201e-78A0A251V920_HELAN; Putative myb domain protein 58
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.18e-68myb domain protein 58