PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678446773
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 206aa    MW: 22271.7 Da    PI: 6.2478
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678446773genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2569.8e-1869118255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr ++ +g+W+AeIrdp     +  +r++lg+f+t e Aa a++  +++++g
  678446773  69 RYRGVRKRP-WGKWAAEIRDP-----HkaARVWLGTFDTSEAAAMAYDMQALRYRG 118
                7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.8E-1269118IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2269128IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-3069127IPR001471AP2/ERF domain
SMARTSM003801.3E-3169132IPR001471AP2/ERF domain
CDDcd000181.48E-2769128No hitNo description
PROSITE profilePS5103224.48769126IPR001471AP2/ERF domain
PRINTSPR003672.5E-117081IPR001471AP2/ERF domain
PRINTSPR003672.5E-1192108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MTAMVSALAR VVAGESSTPA AGGFSTPCKR GREEEEGEEG ESTVIRSAES TVFRYAGTAG  60
FTTEAAGRRY RGVRKRPWGK WAAEIRDPHK AARVWLGTFD TSEAAAMAYD MQALRYRGCK  120
AKLNFPENVK LLDGLPQPGH LPGSHEHPSP AIHSDEPAQF HFSMYSSPED AAASPIPKFY  180
PPQPPDISDI WPEDGGGAGE RYSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2365130167ATERF1
3gcc_A5e-2365130167ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678446773
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090449.12e-36ethylene-responsive transcription factor ABR1-like
TrEMBLA0A4D8YMV82e-40A0A4D8YMV8_SALSN; EREBP-like factor
STRINGXP_010527318.19e-35(Tarenaya hassleriana)
STRINGXP_004160502.12e-34(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.16e-32ERF family protein