PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678446797

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

HD-ZIP

Protein Properties

Length: 198aa MW: 21925.9 Da PI: 9.3963

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678446797	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	51.8	1.4e-16	57	111	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q Lee F +++ ++ ++eLA++l Lt rqV vW+qNrRa+ k 678446797 57 RKKLRLSKNQASLLEESFGRHSSLTPMLKQELARELILTPRQVEVWYQNRRARAK 111 788899***********************************************98 PP
2	HD-ZIP_I/II	103.6	1.6e-33	57	145	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rlsk+q++lLEesF +++ L+p K+elareL l+prqv+vW+qnrRAR k+kq+E ++e L+r + +l+een+rL+ke ee++ + 678446797 57 RKKLRLSKNQASLLEESFGRHSSLTPMLKQELARELILTPRQVEVWYQNRRARAKLKQTEANCELLRRLCTSLSEENQRLRKELEEVK-A 145 69**********************************************************************************9998.4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.13E-15	41	114	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.807	53	113	IPR001356	Homeobox domain
SMART	SM00389	9.3E-12	56	117	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.7E-15	57	111	IPR009057	Homeodomain-like
Pfam	PF00046	7.3E-14	57	111	IPR001356	Homeobox domain
CDD	cd00086	1.29E-12	57	114	No hit	No description
PROSITE pattern	PS00027	0	88	111	IPR017970	Homeobox, conserved site
SMART	SM00340	5.6E-14	113	157	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MGFDDSCLVL ELGIGPDRRN RYREASSVEK RAQEQGSGGS WASSRISDED DRGSYARKKL 60 RLSKNQASLL EESFGRHSSL TPMLKQELAR ELILTPRQVE VWYQNRRARA KLKQTEANCE 120 LLRRLCTSLS EENQRLRKEL EEVKAVKSVT PPLCMQIPAA AIAICPSCQR IGGATVITQS 180 SAATAAKSSF THTPSAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	105	113	RRARAKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678446797

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019267376.1	8e-60	PREDICTED: homeobox-leucine zipper protein HAT22-like
Swissprot	A2Z1U1	5e-48	HOX11_ORYSI; Homeobox-leucine zipper protein HOX11
TrEMBL	A0A314KZ31	2e-58	A0A314KZ31_NICAT; Homeobox-leucine zipper protein hat22
STRING	XP_009775231.1	4e-59	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA290	24	186

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	4e-44	homeobox from Arabidopsis thaliana