PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678446906
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family LBD
Protein Properties Length: 199aa    MW: 22071.4 Da    PI: 9.1964
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678446906genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26065.11.7e-202168148
     DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllka 48
               +CaaCkvlrr+C ++Cvlapyfp +++ kfa +h++FGasn++kll+ 
  678446906 21 PCAACKVLRRRCLQNCVLAPYFPPDDSIKFASAHRVFGASNIIKLLQV 68
               7********************************************986 PP
2DUF26057.25e-189514847100
     DUF260  47 kalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                ++lpe +r da+ss+vyeA+ar+rdPvyG++g i +lqqq+++l+a+la+ ++e
  678446906  95 QELPERQRADAVSSMVYEANARLRDPVYGCAGAIYQLQQQINELQAQLAKSRAE 148
                7899*********************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.33720149IPR004883Lateral organ boundaries, LOB
PfamPF031952.7E-192168IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-1692145IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MESSVITATL TQLQQSPVTS PCAACKVLRR RCLQNCVLAP YFPPDDSIKF ASAHRVFGAS  60
NIIKLLQVRL PRSALIRCRA RVVIVVYYGS NFLPQELPER QRADAVSSMV YEANARLRDP  120
VYGCAGAIYQ LQQQINELQA QLAKSRAEMN ALRLQYATLA SSLFLQPPHS QPLFAGDYTS  180
GGHPHSLGTP FEYYSSFMG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-362015710115LOB family transfactor Ramosa2.1
5ly0_B1e-362015710115LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678446906
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008805041.12e-55LOB domain-containing protein 11-like
SwissprotQ9SK089e-51LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A2H3YXP44e-54A0A2H3YXP4_PHODC; LOB domain-containing protein 11-like
STRINGXP_008805041.16e-55(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.14e-44LOB domain-containing protein 11