PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678446909
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family NF-YB
Protein Properties Length: 148aa    MW: 16822.9 Da    PI: 6.5327
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678446909genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB41.63e-1312108697
      NF-YB   6 rflPianvsrimkkvl...Panakis..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                + lP + v r++k+ l    +++ is  +d+     e +  fi ++++ a d c++ +r+ in++d++ al ++ f +++ plkv l+ +r+ +++k
  678446909  12 EALPRTVVRRLVKEKLsqlSSDTEISllRDSLSAFSESARVFIHYLSATAHDICKESNRQIINAEDVFKALEEIEFPEFIGPLKVALEDFRQKNSDK 108
                578999999999987611156777875579999**********************************************************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.7E-297147IPR009072Histone-fold
SuperFamilySSF471131.66E-2113114IPR009072Histone-fold
PfamPF008087.7E-71482IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MAEKEHEAAE PEALPRTVVR RLVKEKLSQL SSDTEISLLR DSLSAFSESA RVFIHYLSAT  60
AHDICKESNR QIINAEDVFK ALEEIEFPEF IGPLKVALED FRQKNSDKKV ATSSAKLKDG  120
RQAKRKESPA KTEAQRSRKR HDAEDNEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5y26_A2e-121310117100DNA polymerase epsilon subunit D
5y27_A2e-121310117100DNA polymerase epsilon subunit D
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678446909
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088898.14e-60DNA polymerase epsilon subunit 3
TrEMBLA0A2G9HT904e-62A0A2G9HT90_9LAMI; Class 2 transcription repressor NC2, beta subunit (Dr1)
STRINGMigut.D02442.1.p6e-58(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA101612427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.13e-35nuclear factor Y, subunit B11