PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678447928
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family B3
Protein Properties Length: 625aa    MW: 70064.1 Da    PI: 7.287
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678447928genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.13.2e-13284365179
                EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDf 79 
                f+k l+ sd+++ grlvlpkk+ae++   +  +e+  l+++d +gr+W +++++  +++s++yvl+ G +   ++ +L++gD+
  678447928 284 FEKMLSASDAGRIGRLVLPKKCAEAYfpPITCPEGLPLKVMDVKGREWIFQFRFwpNNNSRMYVLE-GINPCIQSLQLQAGDI 365
                89************************99555666777***************9989999999***9.***************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-22278365IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-15281365IPR015300DNA-binding pseudobarrel domain
CDDcd100175.71E-17282365No hitNo description
SMARTSM010195.6E-13284381IPR003340B3 DNA binding domain
PROSITE profilePS508638.642284383IPR003340B3 DNA binding domain
PfamPF023622.0E-10284365IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MSSETMKPCF NSNCKVLTDT FRRGWRRRTG DCAYLCDGCA TAYEDGKFCE TFHSSDSGWR  60
CCESCGKTPN PAWPPPSHFI PSLPERLKDT SVNNWSQIAG SGSLPWRQAP SLLRQSNFDS  120
DVKGKQPFGF DVLGDVDRNH SCEKHATSSC GMKQGVPYER LENGKLKIGS VYLFGNFGLE  180
MKEQPGSLET SSKMLPVSND SLPLYVSSNT LPKSEKDDPQ FAMVHREIRL MSKSGKQDSQ  240
LVASGDVERG NGGTQSIFLP QKGLEMTEKS LQHISDKAKL TPLFEKMLSA SDAGRIGRLV  300
LPKKCAEAYF PPITCPEGLP LKVMDVKGRE WIFQFRFWPN NNSRMYVLEG INPCIQSLQL  360
QAGDIEQIFE DATQIHAKKK SRNSNANNRR LPMETDNTLS FTLKEAQQLM RPPSKVVPSI  420
FVVEGYEFEE FKGDPLVIGR PTIPGTDHSG SLCSAAEEIP REKLEEMIGV TEKDYPRKEQ  480
NNLERTSGVS LAPERSNQLA NMETQCEGDS VPAQRVRSTR HPSHKSGWYQ PPMEKGYNHG  540
QSCYCAVCCS SKLHQSRTLL EIREEVHHQR GSEPVKNGTS NMIQDHRKCY HDEAAGGRSS  600
SSPMKSLIDL NMKPEREEEL WILDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-462673645104B3 domain-containing transcription repressor VAL1
Cis-element ? help Back to Top
SourceLink
PlantRegMap678447928
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096215.11e-170B3 domain-containing protein Os07g0563300
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA71282126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.14e-48VP1/ABI3-like 3