PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678448033
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB_related
Protein Properties Length: 260aa    MW: 29552.5 Da    PI: 10.1979
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678448033genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.9e-1887132148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T+eE++l+v+++++lG++ W++Ia +++ gRt++++k++w+++l
        678448033  87 RGNITEEEEDLIVRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 132
                      7999******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.32882136IPR017930Myb domain
SuperFamilySSF466891.42E-1383139IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-2284136IPR009057Homeodomain-like
SMARTSM007175.0E-1586134IPR001005SANT/Myb domain
PfamPF002496.1E-1687132IPR001005SANT/Myb domain
CDDcd001674.06E-1391132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MLPQSRAHER RLVAPRRRFA PSLHSAARRR GLEDCSNKSG PFTVRQELPP QVEELSPTRY  60
PVFHEGSFRT GGARFHVLWF VAVDIKRGNI TEEEEDLIVR LHRLLGNRWS LIAGRLPGRT  120
DNEIKNYWNT HLCKKLGKSP VAAVKMRPRV EKRKKNDGNR DAVNDACPKI IVYAPKPYRV  180
SSLFSRAESY GSRTTSSSVG GGRAEKREED SHAPPLTWLN LLELEDLPHD NSAAEGHRHD  240
SFAGDANMLD IVYDQFRLLV
Cis-element ? help Back to Top
SourceLink
PlantRegMap678448033
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070362.16e-42transcription repressor MYB5-like
TrEMBLA0A2G9G7354e-39A0A2G9G735_9LAMI; Transcription factor, Myb superfamily
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.11e-27myb domain protein 66