PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678448770
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family bHLH
Protein Properties Length: 512aa    MW: 57116.5 Da    PI: 8.692
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678448770genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.58.5e-17363409455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 hn  ErrRRdriN+++  L+ l+P++      Kl+Ka++L +A+eY+ksLq
  678448770 363 VHNLSERRRRDRINEKMRALQALIPHS-----HKLDKASVLDEAIEYMKSLQ 409
                6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.78E-18355413No hitNo description
SuperFamilySSF474598.51E-19356415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-19357413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.504359408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-14362409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-18365414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MIEDGSYQTE ADHTTAAQTS GPPSDRSPRG LRTTVTVGIN AHFLSAKGKA KPAVSPLFCL  60
VLLPQDIGRS RFCSRGRWMA LGVLRTGIQK WMLSSHCPFR GNIWGEYVDF CKNAVLYLNE  120
NTNLLRRLEN ELMEILWHNG EAVLHRQTTK KPSEFSCQFN QVDEDDDEDE GEDDDLPPVP  180
WSPANESFNK EFCPDLLPQI PATHQQSGKS AAEALGPILM PPRRFGSFET GDVNRTLDDL  240
QFAYKNREGS NSKHRFRMPC LMTRETGHGS MDQTANEANT RLGCSKTLSA EKQLVGTENA  300
CSGGSGNGCQ NTSSQSSDNT ANKRKKRDTE ELKSDAIEME SPQDGNSIPS KKPAPRRRRV  360
AQVHNLSERR RRDRINEKMR ALQALIPHSH KLDKASVLDE AIEYMKSLQL QLQWWMGSGM  420
PRMMLPRTQQ QYIYHAGLGI RPPALPPMQN LMRLPNQAMA VGSMPNQAPM GHGILPGHHK  480
NQMQNATQPQ PVSSSSHPAG VRNGTTNNMK MV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1356371RRRVAQVHNLSERRRR
2367372ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMap678448770
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA104652226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.13e-28phytochrome interacting factor 3-like 5