PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678448784
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ARF
Protein Properties Length: 1077aa    MW: 118554 Da    PI: 6.7173
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678448784genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.45.5e-23136237199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f+k+lt sd++++g +++p++ ae++       ++++++  +l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++++l+
  678448784 136 FCKTLTASDTSTHGGFSVPRRAAEKIfpaldftMQPPAQ--ELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLIAGDSVLFI--RDEKQQLL 231
                99*****************************96555444..8************************************************..5688889* PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                ++++r+
  678448784 232 LGIRRA 237
                ***997 PP
2Auxin_resp117.88.7e-39262345183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+++s+F+v+YnPras+seFv++++k+ ka+  +++s+GmRf+m+fete+s +rr++Gt++g+sdldp rW+nS+Wr+L+
   678448784 262 AAHAATNNSPFTVFYNPRASPSEFVIPLAKYYKAVCsNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPARWKNSQWRNLQ 345
                 79******************************998669********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.2E-40127251IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-43127265IPR015300DNA-binding pseudobarrel domain
CDDcd100171.30E-19135227No hitNo description
SMARTSM010191.5E-22136238IPR003340B3 DNA binding domain
PfamPF023626.1E-21136237IPR003340B3 DNA binding domain
PROSITE profilePS5086312.026136238IPR003340B3 DNA binding domain
PfamPF065073.6E-34262345IPR010525Auxin response factor
PfamPF023095.0E-79631050IPR033389AUX/IAA domain
PROSITE profilePS5174527.5939651049IPR000270PB1 domain
SuperFamilySSF542772.22E-79771043No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1077 aa     Download sequence    Send to blast
MKAPSGGGSA AASRANTSAA SEGEAKKSIN GELWQACAGP LVNLPAAGSH VVYFPQGHSE  60
QVAASMKKDM DVQIPSYPNL PSKLLCILHS IRLHADPDTD EVYAQMTLQP TPSFDKDALL  120
RSDLSMRANK PQMEFFCKTL TASDTSTHGG FSVPRRAAEK IFPALDFTMQ PPAQELVARD  180
LHDNVWTFRH IYRGQPKRHL LTTGWSLFVS GKRLIAGDSV LFIRDEKQQL LLGIRRANRQ  240
PTNLSSSVLS SDSMHIGILA AAAHAATNNS PFTVFYNPRA SPSEFVIPLA KYYKAVCSNQ  300
ISLGMRFRMM FETEESGTRR YMGTITGISD LDPARWKNSQ WRNLQVGWDE STAGEKRNRV  360
SIWEIEPVTA PFFICPSPPF FRQKRPRQPD DAYSDLDVLF RRTMPWLGDD FVSKEPQALP  420
GMSLAQWMHM QQNSPLANSI QTNYMNPLPG SAVQNLSGMD ISQLGLPAMQ VGQHNNQSTE  480
RTNHSAQDQL QKLPSSSLNP LGTIMSPQKQ MNDASLHPPQ NLVCQNMPTS MPVSQVPAQI  540
LQSQGPMQAP SALTQQQQSL INEQPQRNVP QNMSHLQQQI SGQSSLPFQH DVLSQQLHGS  600
ENQIQLQLLQ RIHQQQNSLV SQQPGMAQSS LTQMADQQKQ IMDIPQGFCR SISTTPVMDA  660
SQATTSMQQW TRNDGQNSLG FGQLHLQGKM PQQQQSGMFS ESQGLVGGPL NPTNNQFSAG  720
SSGILAAAAG AGPSAVTEDL PSCSYSPSTN NCPNASLSMM ITSSAQEPMC SNNNLLKEFQ  780
SKADVKASLN ISKSNKQGFF TSDMYPNPTG GQMDYLDSQS SATSVLSQND AHVSQNNNSL  840
SFNPPPVHFR DESHEMDVHG DARNSFLFGS TVENQLAVSM MSDPSMARNM LGSAKEFSTN  900
LSPGGSMVPT YDNPKEPRPG FSSSMVSPRS FGVQDMTFNS IDSTVNDSSF MNRGSWSQPQ  960
VPRMRTYTKV YKRGAVGRSI DITSYSGYDE LKQDMARRFG IEGQLEDGQR IGWKLVYVDH  1020
ENDVLLVGDD PWEEFVNCVR CIKILSPQEV QQMSLDGDFG RNMTPKQACS SSDNVVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1682336645388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMap678448784
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020553508.10.0auxin response factor 19
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A2G9HCE80.0A0A2G9HCE8_9LAMI; Auxin response factor
STRINGXP_009762809.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20730.20.0ARF family protein