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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | 678448854 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 144aa MW: 15689.6 Da PI: 4.3295 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 32.9 | 1.5e-10 | 5 | 33 | 17 | 46 |
HHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 17 kqlGggtWktIartmgkgRtlkqcksrwqk 46
++ ++W+ Ia++++ gRt++++k++w++
678448854 5 MKYDANRWSQIAQHFP-GRTDNEIKNHWHS 33
5677788*********.***********97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 18.061 | 1 | 39 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 3.2E-10 | 2 | 39 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 1.3E-13 | 2 | 36 | IPR009057 | Homeodomain-like |
| CDD | cd00167 | 1.10E-9 | 3 | 32 | No hit | No description |
| Pfam | PF00249 | 3.1E-8 | 4 | 34 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 144 aa Download sequence Send to blast |
MSLLMKYDAN RWSQIAQHFP GRTDNEIKNH WHSCLKKLAD NQFSNTESPV GAPQISPPPL 60 LFAEWLSSDL FLPPCAGIPP DLFSGNGIRE PGCHGDLGSA DHGGGFGVAE EMPSFGYTME 120 EENMGFGCFP GASCNCIDCE SIFF |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | 678448854 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G27810.1 | 9e-11 | myb domain protein 21 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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