PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678449019

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

C3H

Protein Properties

Length: 372aa MW: 41212.3 Da PI: 6.5628

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678449019	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.5	2e-07	155	176	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa G+C+yG++C++ Hg 678449019 155 PICS-FASAGECPYGANCPRVHG 176 5788.9999*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.011	151	177	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.558	151	178	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.8E-5	155	176	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF57850	8.67E-14	210	284	No hit	No description
Gene3D	G3DSA:3.30.40.10	2.4E-10	216	279	IPR013083	Zinc finger, RING/FYVE/PHD-type
CDD	cd00162	8.93E-6	219	279	No hit	No description
SMART	SM00184	5.1E-8	220	277	IPR001841	Zinc finger, RING-type
PROSITE profile	PS50089	12.548	220	278	IPR001841	Zinc finger, RING-type
Pfam	PF00097	2.1E-7	220	277	IPR018957	Zinc finger, C3HC4 RING-type
PROSITE pattern	PS00518	0	244	253	IPR017907	Zinc finger, RING-type, conserved site
SMART	SM00356	0.046	307	335	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.479	307	336	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MKRPTSAFST LRCSLADFPE FVVDNGPNVA DVQPSYRGEE SKNATAAVSD KVHCSALEPS 60 SELSEMSKRY DHIKISKLQS SVSPSTAHTS AEEFHSSTVR SSAALADGLG PGCSSFSESV 120 LYPSGPVWGV NVEQPETRQS DYVPDVAGVD STDIPICSFA SAGECPYGAN CPRVHGDLCP 180 SCKKNCLHPF RPQEREEHMK TCEKRQKYLE TLARSQEIEC SVCLERVLSK TAPAERKFGI 240 LSECNHPFCI SCIRNWRSRS PTYGFDVTST LRSCPTCRQL SYFVIPSVIW YFSDEEKEEI 300 VNGYKAKLKS IDCKHFDFGS GTCPFGTSCF YKHAYRDGRL EEVALRHLGA EDGNTVIAKN 360 IRLSDFLSNL QL

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MKRPTSAFST LRCSLADFPE FVVDNGPNVA DVQPSYRGEE SKNATAAVSD KVHCSALEPS  60
SELSEMSKRY DHIKISKLQS SVSPSTAHTS AEEFHSSTVR SSAALADGLG PGCSSFSESV  120
LYPSGPVWGV NVEQPETRQS DYVPDVAGVD STDIPICSFA SAGECPYGAN CPRVHGDLCP  180
SCKKNCLHPF RPQEREEHMK TCEKRQKYLE TLARSQEIEC SVCLERVLSK TAPAERKFGI  240
LSECNHPFCI SCIRNWRSRS PTYGFDVTST LRSCPTCRQL SYFVIPSVIW YFSDEEKEEI  300
VNGYKAKLKS IDCKHFDFGS GTCPFGTSCF YKHAYRDGRL EEVALRHLGA EDGNTVIAKN  360
IRLSDFLSNL QL

Functional Description ? help Back to Top
Source	Description
UniProt	E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678449019

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019186621.1	1e-140	PREDICTED: zinc finger CCCH domain-containing protein 69
Swissprot	Q5ZA07	1e-127	C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBL	S8EDG2	1e-148	S8EDG2_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.N01471.1.p	1e-139	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3386	21	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.2	1e-121	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Sahi VP, et al. A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo. Plant Signal Behav, 2012. 7(3): p. 375-81 [PMID:22499205] Wadekar HB,Sahi VP,Morita EH,Abe S MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare). Planta, 2013. 237(4): p. 1083-95 [PMID:23262670]