PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678449391
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family Trihelix
Protein Properties Length: 515aa    MW: 58507.3 Da    PI: 7.8559
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678449391genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix81.21.4e-2585219187
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..................................................rergferspkqC 50 
                rW++qe+l+L+e+r++++++++++++k+plW+evs+                                                    +e+g++rs k+C
  678449391  85 RWPRQETLTLLEIRSKLDSKFKETNQKGPLWDEVSRDFtsfdvatskdgdclvlffilwnplcillcdsshsalevsrlnfmssrimsEEHGYQRSGKKC 184
                8*************************************************************************************************** PP

   trihelix  51 kekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                +ek++nl k+ykk+keg+ +r  ++ +++++f+qlea
  678449391 185 REKFQNLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 219
                *******************98..55667*******85 PP
2trihelix48.13.1e-15396458266
   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 
                W++ ev +Li++r+++e  ++rg +++  W+evs+km   g+ersp  Ckekwe++n+++ + k+
  678449391 396 WSEVEVSKLIQLRKSVE--MQRGVSEEMAWKEVSSKMTCFGYERSPLACKEKWESVNNYMVQNKT 458
                **************997..566777999******************************9876665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.36878192IPR017877Myb-like domain
PfamPF138373.8E-9168220No hitNo description
PROSITE profilePS500907.039388450IPR017877Myb-like domain
PfamPF138374.9E-11395459No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MEEDQYGIAD LRHFIAGRSI FPAISQSQTL SAFPLSQPYD MLMFRPDSLN ATSTTTANPT  60
AAASTSGAGF LITAPSGGGD AANGRWPRQE TLTLLEIRSK LDSKFKETNQ KGPLWDEVSR  120
DFTSFDVATS KDGDCLVLFF ILWNPLCILL CDSSHSALEV SRLNFMSSRI MSEEHGYQRS  180
GKKCREKFQN LYKYYKKTKE GKAGRQDGKH YRFFRQLEAL YGESNISGSA SESQHASGSF  240
HYSHRKKATN QQRYPDDEKL SETSLSLSDF SDNPDDNSSD DRAKSENGDS DNRNRGIRRS  300
WKLKIRDFID SHMKKLIDKQ EAWMDKMMRA IEDKDKERTL REEGWRKQDA ARIELRQQLW  360
ARERAWMKAR DTALMDALHK IAGETAPTNS TKADFWSEVE VSKLIQLRKS VEMQRGVSEE  420
MAWKEVSSKM TCFGYERSPL ACKEKWESVN NYMVQNKTEN YFDPFSDQGG GGGVYLGNEQ  480
GIIRNSSPNR IIGGGLSNDN LLRYFMGDGN GRIGD
Cis-element ? help Back to Top
SourceLink
PlantRegMap678449391
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022864074.11e-140trihelix transcription factor PTL-like
TrEMBLA0A2G9G8M21e-149A0A2G9G8M2_9LAMI; Transcription factor GT-2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30632451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.12e-88Trihelix family protein