PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678449820
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ARR-B
Protein Properties Length: 568aa    MW: 62480.6 Da    PI: 6.6963
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678449820genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like59.38.2e-19193236145
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45 
                kpr++W+  LH++Fv av+qL G +kA+Pk+il+lm+v+gLt+e+
  678449820 193 KPRVVWSMVLHRKFVAAVNQL-GYDKAVPKRILDLMNVEGLTREN 236
                79*******************.********************987 PP
2Response_reg84.43.3e-28191271109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+p+ ++ll+ +lek +y +v++a +++ al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+++++++l+ +  Ga 
     678449820  19 VLAVDDDPICLKLLKALLEKCQY-QVETANQARVALKMLRENKdrFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANSDPKLVLKGVTHGAC 113
                   799********************.***************888889*******************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l+Kp+ +eel++
     678449820 114 DYLVKPVRIEELRN 127
                   ************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.42E-3717145IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.4E-4317153No hitNo description
SMARTSM004482.2E-3317129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011044.85418133IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.1E-2519128IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.04E-2441133No hitNo description
Gene3DG3DSA:1.10.10.603.8E-19190245IPR009057Homeodomain-like
SuperFamilySSF466891.22E-10191244IPR009057Homeodomain-like
TIGRFAMsTIGR015574.2E-15193236IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MTAEKLMDGF EEYPRCLRVL AVDDDPICLK LLKALLEKCQ YQVETANQAR VALKMLRENK  60
DRFDLVISDV HMPDMDGFKL LELVGLEMDL PVIMLSANSD PKLVLKGVTH GACDYLVKPV  120
RIEELRNIWQ HVIRRRKLDP KSHQTRLSDQ AKAVQQNGGA HSFVHENQDV SVNRKRKDDD  180
DDSEGDDPAS QKKPRVVWSM VLHRKFVAAV NQLGYDKAVP KRILDLMNVE GLTRENKYRL  240
YLKRINSDAK QAAALNPHCI PPYAASLGDM YFSAAGRLGT PVVSPYPTGG ILGRPDASSS  300
SLGSIRGLAP PSLIQPSHAR NVNGLSRALS GLPQMPQNPS LFPGSLTMDQ FQMNKHAPDI  360
VNIDHSPVYE ASSLLNGQRD TTGGFRSHTS HNVATFSLGA STAPILHDPL SPKPQQSSLA  420
DVPFHSQLPV NSKGDTDFPY FQNEANHLLN PAQATNLSWG VQGLDCNLGA SSNYSIGITT  480
PTTSAFTSVQ PAGGPPTLVQ HTTNRSSAAE TRTMANEAFA MGQTKIPDEN ATRGYDPFDE  540
VVTAMTKREE HEAVRSCEFE FDDYSFGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-16190246264ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678449820
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084015.11e-171two-component response regulator ARR12
SwissprotA2X1N21e-102ORR24_ORYSI; Two-component response regulator ORR24
TrEMBLA0A4D8ZTF51e-162A0A4D8ZTF5_SALSN; Two-component response regulator ARR-B family
STRINGMigut.K00347.1.p1e-139(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22582458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.12e-91response regulator 12