PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678450000
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 194aa    MW: 21849.6 Da    PI: 6.293
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678450000genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.37e-173785254
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                y+GVr +  +grWv+eIr+p++   + r++lg+f ta++Aa+a++ a+ + +
  678450000 37 VYRGVRMRA-WGRWVSEIREPKK---KSRIWLGTFATADMAARAHDVAAMAVK 85
               7*****998.**********854...6*********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.5893794IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-203794IPR016177DNA-binding domain
PfamPF008472.5E-113786IPR001471AP2/ERF domain
SMARTSM003803.0E-3437100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-313795IPR001471AP2/ERF domain
PRINTSPR003675.3E-103849IPR001471AP2/ERF domain
CDDcd000185.79E-303895No hitNo description
PRINTSPR003675.3E-106076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MERQRSTAGA PDKRKRKCGA TEKQLQQQQQ QEWKQKVYRG VRMRAWGRWV SEIREPKKKS  60
RIWLGTFATA DMAARAHDVA AMAVKGSSAV LNFPEIADLL PRPATSSTRD IQAAATKAAM  120
LDQPQRSSPS FVDSELSTAP EELEEIVELP KLSGGEEFTA VETGVWEYDD YDQPPIFLSL  180
HSEDFESLLW KHSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-163494263ATERF1
3gcc_A1e-163494263ATERF1
5wx9_A3e-1638991577Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678450000
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093630.13e-52ethylene-responsive transcription factor TINY-like
TrEMBLA0A2G9H8141e-52A0A2G9H814_9LAMI; Uncharacterized protein
STRINGMigut.J01109.1.p2e-49(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.15e-34ERF family protein