PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678450485
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family M-type_MADS
Protein Properties Length: 295aa    MW: 33140.4 Da    PI: 5.4426
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678450485genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.63.2e-131148340
               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
               i+ +  r  tf +R+   lKKA+ELS+LC++++av+i 
  678450485 11 IQGDKERASTFKRRLDSFLKKANELSILCGIKIAVVIH 48
               77788999****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.4147IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.07E-15181IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-7160IPR002100Transcription factor, MADS-box
CDDcd002661.39E-17384No hitNo description
PfamPF003192.5E-121150IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MPRKATKHAP IQGDKERAST FKRRLDSFLK KANELSILCG IKIAVVIHNP CDGYSMLWPS  60
EDAFTALTEK FLSFPEREMA RKMVLQERFL VDEVEGRALQ SLKLKQRNDD REVELCMYQI  120
EDDVSFQTLD LKQLSGLYSL ADEKLKELQK RSRELEGMSD ANTGNEAAVP EILERPLEDN  180
NSCFIGSSSH GLHDNLDASA ANAWISSAIR GDRGECIPIP RSDFSLGSGF QYDVFVYVVG  240
GVEVADTPPW LWPQFGSNRP FAFSNARATC ARIKPENDTV SSHAVSGMPC HYQHY
Cis-element ? help Back to Top
SourceLink
PlantRegMap678450485
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-18AGAMOUS-like 80