PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678450631

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

C3H

Protein Properties

Length: 186aa MW: 20956.8 Da PI: 7.3108

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678450631	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.3	8.6e-06	25	45	3	23
S---SGGGGTS--TTTTT-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkF 23 ++ C++++rt tC yG++C F 678450631 25 ESDCPYYLRTTTCAYGNTCYF 45 679****************66 PP
2	zf-CCCH	36	1.2e-11	72	96	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++ tGtCkyG+ C+F+H++ 678450631 72 EPDCPHYMSTGTCKYGAVCRFNHPK 96 789********************96 PP
3	zf-CCCH	30.5	6.4e-10	117	139	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C++++++G Ck+G CkF+H++ 678450631 117 PCNYYMQNGKCKFGFACKFHHPE 139 7********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	7.47	23	50	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	54	24	49	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.4E-5	69	96	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.732	69	97	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.3E-9	72	96	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.11E-6	74	99	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.9E-6	75	96	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.746	112	140	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.002	112	139	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.11E-6	112	140	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.8E-8	117	139	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.0E-4	117	138	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MGALSLNDNA DNFQPGGFYL ECTGESDCPY YLRTTTCAYG NTCYFSYPQY PPGTLYNHRI 60 VYAPCFPERA GEPDCPHYMS TGTCKYGAVC RFNHPKSRLS DLPLNSLGLP MRQDAIPCNY 120 YMQNGKCKFG FACKFHHPEP SPPYAFFPML CAPAPFPTTT YFAASPYQQP QSYMPVYAVH 180 SQLFVN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678450631

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13571	10	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	4e-38	zinc finger protein 1