PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678451588

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

LBD

Protein Properties

Length: 375aa MW: 40841.8 Da PI: 8.8687

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678451588	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	94.5	1.1e-29	181	282	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C++C+vlr++C+++Cvl+p++ +++q +++ +v+k+FG++ ++ +++a+pe++r+ +++sl++eA r+ +Pv+Gavg++++++++++q+++e++ 678451588 181 SCNGCRVLRKGCSESCVLRPCLqwiqgAEAQGHATVFVAKFFGRAGLMGFISAVPENQRPSVFRSLLFEAVGRTVNPVNGAVGLMWTGNWHVCQAAVETV 280 6*******************9999878889**************************************************************9998 PP DUF260 96 ll 97 l+ 678451588 281 LR 282 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.815	180	286	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.8E-25	181	280	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MIRFLLLNLG STVDVLKLPM EKKASSFDNS IHGVYFQTQT LASLVSTVYP SAACRRGVGK 60 KRKRSIPSGP YGGPEIWASG DSTLLRAHPR QGPNQIPKKD DEIITQRKRE GEGTYSVVVQ 120 EHRNLHRPIR TRNLYPTVQN RSTAKTCSRY LPMPSTWESN PTTNQGVSDP LCFALCVCIM 180 SCNGCRVLRK GCSESCVLRP CLQWIQGAEA QGHATVFVAK FFGRAGLMGF ISAVPENQRP 240 SVFRSLLFEA VGRTVNPVNG AVGLMWTGNW HVCQAAVETV LRGGALKPIR DTLGPVPGLD 300 DGSDCTDIFR VEVSMEKLYV GIGEPKDLDL CLSPGGSQPL PRHSGSPSMN SEDSVITTCG 360 GDHTPNGVKL LNLFN

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MIRFLLLNLG STVDVLKLPM EKKASSFDNS IHGVYFQTQT LASLVSTVYP SAACRRGVGK  60
KRKRSIPSGP YGGPEIWASG DSTLLRAHPR QGPNQIPKKD DEIITQRKRE GEGTYSVVVQ  120
EHRNLHRPIR TRNLYPTVQN RSTAKTCSRY LPMPSTWESN PTTNQGVSDP LCFALCVCIM  180
SCNGCRVLRK GCSESCVLRP CLQWIQGAEA QGHATVFVAK FFGRAGLMGF ISAVPENQRP  240
SVFRSLLFEA VGRTVNPVNG AVGLMWTGNW HVCQAAVETV LRGGALKPIR DTLGPVPGLD  300
DGSDCTDIFR VEVSMEKLYV GIGEPKDLDL CLSPGGSQPL PRHSGSPSMN SEDSVITTCG  360
GDHTPNGVKL LNLFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	59	64	KKRKRS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678451588

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099355.1	2e-90	LOB domain-containing protein 37-like
Swissprot	Q9SN23	4e-66	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A1U7YPR8	4e-86	A0A1U7YPR8_NICSY; LOB domain-containing protein 37
STRING	XP_009801229.1	6e-87	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	1e-68	LOB domain-containing protein 39