PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678451653

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

WRKY

Protein Properties

Length: 276aa MW: 30822.7 Da PI: 8.7297

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678451653	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102	3.4e-32	137	195	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s+fprsYYrCt ++C vkk+ver+ ed ++v++tYeg+H+h+ 678451653 137 LDDGYRWRKYGQKGVKNSPFPRSYYRCTNTSCGVKKRVERCLEDRSIVITTYEGTHTHP 195 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.5E-34	122	197	IPR003657	WRKY domain
SuperFamily	SSF118290	7.06E-29	129	197	IPR003657	WRKY domain
PROSITE profile	PS50811	29.872	132	197	IPR003657	WRKY domain
SMART	SM00774	9.2E-37	137	196	IPR003657	WRKY domain
Pfam	PF03106	2.9E-26	138	195	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MMIPEISSFS TVGEGSFYGD RDSKETLGFL DMLTSHDFGS SRSTFDDLLQ SVTAHKILSV 60 SAAREYSEFS KAPASPNSAS SSTNEGVGLD DGKRSNIGNE DERSQNQIKK LLGAKNKIKR 120 QREPRFAFMT KTDIDHLDDG YRWRKYGQKG VKNSPFPRSY YRCTNTSCGV KKRVERCLED 180 RSIVITTYEG THTHPCPITP RGAFGLLSET AAARGGRCPS SRFMMPQTHQ RAPPCFPIPD 240 PAFSETTFCP PASCMERDHG LLEDMLPSKI RKDPRM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-24	130	197	10	77	Probable WRKY transcription factor 4
2lex_A	5e-24	130	197	10	77	Probable WRKY transcription factor 4
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	121	KIKRQR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678451653

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100744.2	5e-73	probable WRKY transcription factor 48, partial
Swissprot	Q9FGZ4	3e-50	WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBL	A0A2G9I0G1	1e-75	A0A2G9I0G1_9LAMI; Uncharacterized protein
STRING	XP_002519250.1	4e-64	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1309	24	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	2e-52	WRKY DNA-binding protein 48

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]