PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678451683
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GATA
Protein Properties Length: 155aa    MW: 16377.3 Da    PI: 9.7884
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678451683genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA596.1e-193165135
       GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
               C+ Cgt+kTplWR gp g+k+LCnaCG++ rkk++
  678451683 31 CVDCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRR 65
               ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.5E-142577IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-132876No hitNo description
PROSITE profilePS5011412.2552961IPR000679Zinc finger, GATA-type
CDDcd002022.41E-113065No hitNo description
Gene3DG3DSA:3.30.50.107.1E-163065IPR013088Zinc finger, NHR/GATA-type
PfamPF003209.2E-173165IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403156IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MDLRDDGSEC QGMSNRTFDV VSSDGANLKR CVDCGTSKTP LWRGGPAGPK SLCNACGIRS  60
RKKRRALMTK QEKNSKKCSS LSPRGHHSCS HSSSPSSSSA GDGGDSFQCK NTSVGSGSQS  120
SLQKPRSNTN PKRKLGEEEQ AAFLLLALSC GSVYG
Cis-element ? help Back to Top
SourceLink
PlantRegMap678451683
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100810.11e-50GATA transcription factor 15-like
TrEMBLA0A4D9A7J81e-53A0A4D9A7J8_SALSN; Uncharacterized protein
STRINGMigut.G00106.1.p7e-44(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19992362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.12e-21GATA transcription factor 15