PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678452053
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 199aa    MW: 21120.7 Da    PI: 8.7395
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678452053genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.0001184106123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                y+C+ C+k Fs+   L  H  +H
  678452053  84 YRCTVCDKAFSSYQALGGHKASH 106
                9***********99999998887 PP
2zf-C2H213.70.00018134156123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++C k+F++   L  H r+H
  678452053 134 HQCSICQKCFPTGQALGGHKRKH 156
                79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.0E-983156No hitNo description
PROSITE profilePS5015710.09784106IPR007087Zinc finger, C2H2
PfamPF139124.6E-1284107IPR007087Zinc finger, C2H2
SMARTSM003550.009284106IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
PROSITE profilePS501579.058134156IPR007087Zinc finger, C2H2
PfamPF139121.1E-9134158IPR007087Zinc finger, C2H2
SMARTSM003550.054134156IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280136156IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MALETVNSST APACGVDEVD TWTKSKRSKR QRRAYGTTPE EEYLAFCLMM LARGGGVGGQ  60
SPPAGGKDVK KSDGESFPRI GNCYRCTVCD KAFSSYQALG GHKASHRVKI QPTYDAAPGL  120
SASNFSVSAA DKLHQCSICQ KCFPTGQALG GHKRKHYDGV LGGAAAKSRS TSSATRNFDL  180
NLPARAEPQD EEVESAPVA
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678452053
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022888193.13e-46zinc finger protein ZAT10-like
SwissprotQ424304e-35ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A4D9BGD61e-48A0A4D9BGD6_SALSN; Uncharacterized protein
STRINGXP_008792675.11e-44(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7352495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.17e-34C2H2 family protein