PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678452226
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family M-type_MADS
Protein Properties Length: 241aa    MW: 26337.4 Da    PI: 7.4624
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678452226genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.11.7e-161868151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               k+i++ks+rq tf+kR +g++K A E S+LC++ + +   s+ g+++++s+
  678452226 18 KKISDKSRRQATFTKRVQGLFKEAAECSILCGVSITMYARSPGGQIFTFST 68
               68***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-131069IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.2871070IPR002100Transcription factor, MADS-box
CDDcd001201.04E-171168No hitNo description
SuperFamilySSF554552.49E-151170IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-131232IPR002100Transcription factor, MADS-box
PfamPF003193.2E-151966IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-133247IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-134768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGSGDLRKTG RRCKLEIKKI SDKSRRQATF TKRVQGLFKE AAECSILCGV SITMYARSPG  60
GQIFTFSTGT TPHNPDPRCL LGGVNSSFGE NRAAYAQVVQ NVQSESGEKK KQTREALFWW  120
ERSVDDIHEL HDLEEFVAAL EDLRHRVSVE IEKANGASPS RPPPPPVAAQ NVPLATQDFA  180
SATASTSPIQ NNDHAVGYSN LTTPLQMNKE SDSGSSTSGM STDDFDSDCS IGKKIEEQKK  240
K
Cis-element ? help Back to Top
SourceLink
PlantRegMap678452226
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.12e-17M-type_MADS family protein