PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678452358
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 215aa    MW: 23488.4 Da    PI: 4.8782
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678452358genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.84.1e-2156107156
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                s y+G+r+++ +g+W+AeIrdp   gk  r++lg+++taeeAa+a+++a+++++ge
  678452358  56 SIYRGIRRRP-WGKWAAEIRDP---GKGIRVWLGTYDTAEEAARAYDRAARRIRGE 107
                57********.**********8...545**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-1456107IPR001471AP2/ERF domain
CDDcd000185.76E-2256115No hitNo description
SuperFamilySSF541716.54E-2456115IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.4E-3357115IPR001471AP2/ERF domain
SMARTSM003807.8E-3957120IPR001471AP2/ERF domain
PROSITE profilePS5103224.65857114IPR001471AP2/ERF domain
PRINTSPR003678.7E-125869IPR001471AP2/ERF domain
PRINTSPR003678.7E-128096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MCGGAILAGL VPGLRGSRLE LTSADFWPDV ANPPKRPAPS SAGDELQTPV KKQRKSIYRG  60
IRRRPWGKWA AEIRDPGKGI RVWLGTYDTA EEAARAYDRA ARRIRGEKAK LNFPNEDDAA  120
PISGKVEVKS EEIDLATEGT VTGGGDGGAE KEPVIPFEKQ PTMAVEDEVQ KLSNELMAYE  180
SYMSFYQIPY LDGASGAAPS SQPQATMQLW SFDEI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-22581161574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15064KKQRKSIYRGIRRRP
Cis-element ? help Back to Top
SourceLink
PlantRegMap678452358
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079624.13e-75ethylene-responsive transcription factor ERF071
TrEMBLS8E4864e-69S8E486_9LAMI; Ethylene response factor 2 (Fragment)
STRINGXP_008454315.16e-65(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA71182329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.17e-32ERF family protein