PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678452367
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family M-type_MADS
Protein Properties Length: 235aa    MW: 26770.2 Da    PI: 5.8272
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678452367genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.53e-27959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krie+ks rqvtfskRrng+lKKA ELSvLC+a+vav+ifss+gk y y+s
  678452367  9 KRIEDKSARQVTFSKRRNGLLKKARELSVLCGADVAVVIFSSSGKPYNYCS 59
               79***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.885161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-30277IPR002100Transcription factor, MADS-box
CDDcd002652.75E-38273No hitNo description
PRINTSPR004042.8E-25323IPR002100Transcription factor, MADS-box
PfamPF003192.7E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGRRRLEIKR IEDKSARQVT FSKRRNGLLK KARELSVLCG ADVAVVIFSS SGKPYNYCSN  60
NSLAKTLRRY YNHVEPESSH PSGVSDDKAC NFKDPEYITR EELLQVVERE LEELDGDQRS  120
DVELVLLEDQ LQNALVQTKK AKAFDEVLLC FLVHRRGCLD YQRYAFSDPC FSTQRKPDSI  180
TVQTDWLLNV ISNLQDVETA LLDQNNFLED KISRSTVKNA AALDLNAVPD GYQSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A3e-19184183MEF2 CHIMERA
6bz1_B3e-19184183MEF2 CHIMERA
6bz1_C3e-19184183MEF2 CHIMERA
6bz1_D3e-19184183MEF2 CHIMERA
Cis-element ? help Back to Top
SourceLink
PlantRegMap678452367
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022885395.18e-47agamous-like MADS-box protein AGL27
STRINGXP_009795052.11e-43(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65080.16e-29MIKC_MADS family protein