PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678452482
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family WRKY
Protein Properties Length: 552aa    MW: 62387.8 Da    PI: 5.5298
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678452482genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY23.31.3e-074514932059
                S-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY  20 fprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                 +r Y+rC+++   +C + k+v+ ++e p +  +tY  +H+++
  678452482 451 KTRCYFRCSHKfdqKCGALKQVQMTQEYPPIYRTTYIARHTCK 493
                579*******9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.20.20.802.1E-96106355IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514454.08E-60107355IPR017853Glycoside hydrolase superfamily
PfamPF001506.9E-12118332IPR001547Glycoside hydrolase, family 5
PROSITE patternPS006590272281IPR018087Glycoside hydrolase, family 5, conserved site
SMARTSM007746.5E-7443494IPR003657WRKY domain
PfamPF031061.7E-8451493IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.0E-9451493IPR003657WRKY domain
SuperFamilySSF1182902.22E-8452493IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MEKNLHLRFE GTHALHHGSL SVQESAHIYL QFCSSPIQCP ANNMKAFCFK GLAIACIILP  60
FLLCASSVEE DEQHKNEESI ELHLSSHEVY ERHQDDDEEL HQDTWSFVKT RGKQFIVDGK  120
PFYFNGFNTY WLMVFGTDES TKGKVSHLFQ EASTVGLSVC RTWAFNDGQW RALQRSPSVY  180
DEQVFKGLDF VVSEARKYRI RLILSMVNNW EDYGGKAQYV KWGKEAGLNL TSNDDFFSHE  240
TIKSYYKAHI NTLLNRVNSI TNIAYKYDPT ILAWELMNEP RCESDPSGDK LHSWIEEMAE  300
YVKSIDPKHL LEIGLEGFYG PSTPQRVQLN PDATCQQAGT DFIRNHQAPG VDFASSSDES  360
NGGESLISVL TEGKLAAERL SEFLHHGGQL HGPDSLLQAQ GLADRVSHSL SQALLILDPG  420
AVGGEISGVP AVEPGFTLSA AGVTDRPLRR KTRCYFRCSH KFDQKCGALK QVQMTQEYPP  480
IYRTTYIARH TCKTAVAPAE GPSFRLTFHT LENTPFYNEI GDPRSEQDDP NGFPFEDYLI  540
TPEYELGAQW WN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rh9_A2e-911063555249endo-beta-mannanase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678452482
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095154.11e-155mannan endo-1,4-beta-mannosidase 6 isoform X1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66600.18e-15ABA overly sensitive mutant 3