PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678452880
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ARR-B
Protein Properties Length: 596aa    MW: 65614.8 Da    PI: 6.4286
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678452880genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like92.63.1e-29205258155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                kpr++Wt+eLH +Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYR+
  678452880 205 KPRVVWTSELHLQFVNAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRI 258
                79*******************.********************************7 PP
2Response_reg74.15.3e-25261351109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+ + +++l+++l + +y+  + ++ +e+al+ll++++  +D++l D+ mp+mdG++llk+   e  +lp+i+++a ++++ + + +  Ga 
     678452880  26 VLVVDDDLTCLKILERMLVNCHYKGLTKCSRAEDALKLLRDHKdgYDIVLSDVHMPDMDGFNLLKNVGLEM-ELPVIMMSADDSKDVVMKGITHGAC 121
                   89*************************************999999**********************6644.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+++e+l +
     678452880 122 DYLIKPISMEALKN 135
                   **********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521729.39E-3423149IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23008.2E-4123162No hitNo description
SMARTSM004484.6E-2824137IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.13125141IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.5E-2226135IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.27E-2527140No hitNo description
PROSITE profilePS5129410.756202261IPR017930Myb domain
SuperFamilySSF466893.49E-21202262IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-30204263IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-26205258IPR006447Myb domain, plants
PfamPF002493.4E-8207257IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MSFASSCSSR NSADRVPRQF PAGLRVLVVD DDLTCLKILE RMLVNCHYKG LTKCSRAEDA  60
LKLLRDHKDG YDIVLSDVHM PDMDGFNLLK NVGLEMELPV IMMSADDSKD VVMKGITHGA  120
CDYLIKPISM EALKNIWQHV VRRKKQGPKE HSGNEDWDRA QRQSEDVDYT SSANEAHWKG  180
GGSKKRREEE DDEDEDRDDS STLKKPRVVW TSELHLQFVN AVNQLGIDKA VPKKILELMN  240
VPGLTRENVA SHLQKYRIYL RKLNMSQRNG IASPFDSAFG TLHGLDFPLF GAAGQQLSPQ  300
GAATVQNPLL NRISNRSGMD PRAIFSSENP KIGFFPQKDC SNKLLHGIPT AMDSKQLAAA  360
ALHHHSEQPF GNINIPMLIP SQSSNQSSLP QMIQLPLRTI ANVLNPMPSG IHSAAAGHGG  420
FSNVYLRNFG ASVSQPLAFE RNQGSDLPDS SRLCPVNNNE WRNMGLRADA NTPVEEMKLE  480
MVVSGGGMNR RAVGDLEHQA AGAVCPETKN NSSSTSSSSV VPTCTGDSPS RNKDAEGGGV  540
PVVHDIHNYF FSDQYEGEDV ISRLLGQSES SVLAVEHDCR SLDGFVFPYG NQQELN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-22204264464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678452880
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071399.11e-156two-component response regulator ARR2 isoform X1
SwissprotQ9ZWJ91e-123ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A4D9A8J21e-150A0A4D9A8J2_SALSN; Two-component response regulator ARR-B family
STRINGXP_008438918.11e-144(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32902038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-116response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]