PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678452961
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family Dof
Protein Properties Length: 161aa    MW: 18298.4 Da    PI: 9.4207
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678452961genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.72.9e-39361361
     zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
               ++alkcprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg r+nk+ 
  678452961  3 QQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGYRRNKRG 61
               7899****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-27360IPR003851Zinc finger, Dof-type
PfamPF027018.5E-34460IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.283660IPR003851Zinc finger, Dof-type
PROSITE patternPS013610844IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MDQQALKCPR CDSTNTKFCY YNNYSLSQPR YFCKSCRRYW TKGGTLRNVP VGGGYRRNKR  60
GSNTPAKRTQ DHQLTTAPAI PNHMILSLPT MQYDTSNDLA LAVSRFFQKN TDQGFRGNPS  120
LSDLAIWGNP NLAAFDGLES HHHSNWFYSE IPGNHEVGTL F
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678452961
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9475245e-31EU947524.1 Zea mays clone 346044 mRNA sequence.
GenBankKJ7269775e-31KJ726977.1 Zea mays clone pUT3678 C2C2-DOF transcription factor (DOF32) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089362.12e-46dof zinc finger protein DOF2.1
SwissprotQ8LE431e-35DOF21_ARATH; Dof zinc finger protein DOF2.1
TrEMBLA0A1Q3BTQ13e-43A0A1Q3BTQ1_CEPFO; Zf-Dof domain-containing protein
STRINGVIT_06s0004g03420.t016e-44(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28510.16e-38Dof family protein