PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678453075
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C3H
Protein Properties Length: 234aa    MW: 27075.5 Da    PI: 6.9579
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678453075genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.41.2e-0883104426
                ---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                + C++f+r G C++Gd C +aHg
  678453075  83 SACPDFRR-GGCPRGDDCEYAHG 104
                57******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.2E-578108IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-479105IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.43279106IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-783104IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-684106IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.052114138IPR000571Zinc finger, CCCH-type
SMARTSM0035613114137IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MMMMIGDYGW AQRDLRFAVG CEGIEDEFDV PVDAFSCDSF RMFEFKVKRC RRARAHDWTD  60
CPYAHPGEKA RRRDPRFYAY TGSACPDFRR GGCPRGDDCE YAHGVFECWL HPSRYRTQLC  120
KDGTHCRRRV CFFAHTPEQL RRHIPEAYAV HIPSSPAYSS PSSPTESASP DLQFICPFPF  180
QFRFGSPIQT QISAHFTPFE EEDDLMVERV ESGKALREKL YAKLVEENSL SRAV
Cis-element ? help Back to Top
SourceLink
PlantRegMap678453075
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081722.15e-81zinc finger CCCH domain-containing protein 23
SwissprotQ9M0G22e-66C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A4D9AMK83e-74A0A4D9AMK8_SALSN; Uncharacterized protein
TrEMBLS8D8039e-75S8D803_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.A00165.1.p1e-74(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18572158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.12e-64C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]