 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | 678453212 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
|
||||||||
| Family | MYB_related | ||||||||
| Protein Properties | Length: 209aa MW: 23347.7 Da PI: 5.5857 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 26.5 | 1.5e-08 | 12 | 34 | 23 | 46 |
-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46
+W++Ia++++ gRt++++k++w++
678453212 12 RWAAIAARLP-GRTDNEIKNYWNT 34
5*********.***********96 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 11.712 | 1 | 40 | IPR017930 | Myb domain |
| CDD | cd00167 | 4.52E-7 | 11 | 34 | No hit | No description |
| SuperFamily | SSF46689 | 2.37E-7 | 11 | 45 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 9.4E-12 | 12 | 47 | IPR009057 | Homeodomain-like |
| Pfam | PF00249 | 8.8E-7 | 12 | 34 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 209 aa Download sequence Send to blast |
MMRPEARALI IRWAAIAARL PGRTDNEIKN YWNTSIKKKL MKTGIDPVTH APRLDYLLGF 60 INKSSLVHLL DPLALQLKLA MSLLTPATEI ATPFLWQKLL EKELELVAPY AKPQTTLPEA 120 HACLNNHPSS FQGFSFINNT FQDNNFTEPD VYGSMLPVNS SICNDGFRSM RFDDSSAMHP 180 GGAAEEGETP WGIEIPEGLN LDELMHANQ |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | 678453212 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G21440.1 | 1e-15 | MYB-like 102 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|