PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678453243
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C3H
Protein Properties Length: 597aa    MW: 65478 Da    PI: 7.7117
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678453243genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.6e-07254274526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C+ f + G C  Gd+C +aHg
  678453243 254 PCPEFKK-GSCAKGDNCEYAHG 274
                8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.09E-1516141IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.9E-1517168IPR020683Ankyrin repeat-containing domain
PfamPF127962.8E-958130IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.00862142IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00986292IPR002110Ankyrin repeat
CDDcd002042.26E-1364160No hitNo description
PROSITE profilePS5008811.0697132IPR002110Ankyrin repeat
SMARTSM002480.003597129IPR002110Ankyrin repeat
PROSITE profilePS5010313.357249276IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-5249275IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4252275IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-4254274IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-4281312IPR000571Zinc finger, CCCH-type
SMARTSM0035638284307IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.878284308IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MVAGNQVERA EFSPKSCTKL LELAAIDDLS AFRYEIEMMG SNLDQVGFWY GRSFNSRKMG  60
FEERTPLMIA SLYGSTSILK YIVNSGQVNI NRACGSDGAT ALHCAAAGGS WSSLEAVKIL  120
INASGDVNAV DMKGKRAVDL VAPCVKASSS SKRKTLEILL SGVITSTSKL EEVEEGNSPK  180
ATNEGSEKKE YPIDISLPDI NSGIYGTDEF RMYSFKVKPC SRAYSHDWTE CPFVHPGENA  240
RRRDLTKYNY TCVPCPEFKK GSCAKGDNCE YAHGVFESWL HPAQYRTRLC KDETGCSRKV  300
CFFAHKREEL RPLYACTGSA MPSPKSVSTT CVDLTTLSPM SLGSSSITCS SPMGGGISWQ  360
SKTNFLTPPT PTLQLPGSRL KSGMSAREMD VDMEILGLEK VRIQQRHQQL VEQMSSSPCT  420
YSSSSSRLGG EIKATNLDDM FGSYDTSLLS QLQSSPPGMQ IRQNLKQLRM SYPSKMSTSG  480
AVAAAVLNSR SSSAFTKRSQ SFIDRGRSSL SGGVPSKLSE WSSHDGRLEW GFNGEDLNML  540
RKSSSFGNRN GIGIGSMPTP PNLEEPDVSW VNSLVKEAEP HVHWLDQMYM EQEQMVA
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678453243
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084902.10.0zinc finger CCCH domain-containing protein 29
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A2G9I5810.0A0A2G9I581_9LAMI; CCCH-type Zn-finger protein
STRINGEOY177610.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25582245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.21e-178C3H family protein